Click here to switch to the map view.

The map label for this gene is ydcO [H]

Identifier: 146282931

GI number: 146282931

Start: 2813820

End: 2815151

Strand: Direct

Name: ydcO [H]

Synonym: PST_2592

Alternate gene names: 146282931

Gene position: 2813820-2815151 (Clockwise)

Preceding gene: 146282912

Following gene: 146282933

Centisome position: 61.61

GC content: 66.37

Gene sequence:

>1332_bases
ATGACAGGCAGCAGCCATTGCCGACTGTTACGCCCAACGCGCCTTTGGCTGTACCGGGACGCTGGCCAGCGCAGCCCCCT
AGGCTTGTACCATAGGCCGCGGCAGCCGTCGGCCTCCCATCGCTCAGCAGAAGAACAGCAAAGAATGAACGAAAACAGTC
GCAGCGCCCTGCGTCCTCTGAGCGACAGCTCGCCATCCACTGTCGTCGCCGGCTTCATTGCCATGCTCACCGGCTACACC
AGTTCACTGGTGCTGATGTTCCAGGCGGGCCAGGCGGCCGGGCTGAGTGCCGGACAGATCTCGTCGTGGATCTGGGCGCT
GTCCATCGGCATGGCGATCTGCAGCATCGGCCTGTCGTTGCGCTATCGCACGCCCGTGGTGGTTGCCTGGTCGACGCCCG
GCGCCGCGCTGCTGATCACCAGCCTGCCCGGCGTTCCCTATGCCGAAGCGATCGGCGCCTTCATCTTCGCATCGGCCTTG
ATCGCGCTGTGCGGCATCACTGGCAGCTTCGACCGCCTCATGCGGCGGGTACCGGCGTCCCTGGCCGCCGCGCTGCTGGC
AGGCGTGCTGTTCAACATCGGCAGCGAAATCTTCCGCGCCGTTGGTGTCCAGCCGCTGCTTGTGCTCGGCATGTTCTTCA
GCTACCTGCTGACCAAGCGCCTGCAGCCACGTTACGCAGTGCTGGCCGCACTGCTGGTGGGTTGCCTGATCGCCGGGGTT
ACCGGCCTGCTGGATTTCCAGCGCTTCAGCCTGCAGATAGCGGTGCCGGTGTGGACCACGCCGGCATTCTCTTTCGCTGC
CGTATTCAGCATCGGCATCCCGCTGTTCGTTATCGCGATGGCCTCGCAGAACATGCCGGGGCTTGCCGTGCTGCGCGCCG
AGGGCTATCAGGTGCCGGCTTCGCCACTGATCTCGACGACGGGCATCGCCTCGGTGCTGCTGGCCCCATTCGGCTCCCAC
GGCATCCATCTGGCGGCGATCACCATGGCGATCTGCGCCGGCCCGGAGGCGCACCCCGACCCAGACAAACGCTACACCGC
AGCAGCCTGGTGCGGCGTGTTCTACGGCATCGCCGGTATCTTCGGTGCGACGCTGGCGGCGCTGTTCGCGGCCTTTCCGG
CCGCGCTGGTGCTGTCCATCGCGGCGCTGGCCCTGCTCGGCTCGATCGGTTCGGGGCTGACCCAGGCGATGCAGCAACCC
AACGAGCGCGAAGCGGCGCTGATCACCTTCATGGTGACGGCATCGGGGCTGACGCTGTTCGGCATCGGCGCGGCGCTGTG
GGGCCTGATCGCGGGGGTAATCACCTTGCTGATTCTGCGCCGCCGCAACTGA

Upstream 100 bases:

>100_bases
AATCCTCCAACAGCCGCGGTTTTTTTGACGCATCGCGCGGCGAGCAAAGACTAGATAGCAACAAGGGTGCCAGTTCGCAG
GTGAAGCGCCTGACGGGGCG

Downstream 100 bases:

>100_bases
GCGGCGCTGAAGGGGGTGTCCGGCCAGGCAGCGTCGGGTGCGTCGTCAGATCGCCGTCGCACCACCATCCACTGCCAGGG
CGTGGCCCGTGGTGAACGCG

Product: benzoate transport protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 443; Mature: 442

Protein sequence:

>443_residues
MTGSSHCRLLRPTRLWLYRDAGQRSPLGLYHRPRQPSASHRSAEEQQRMNENSRSALRPLSDSSPSTVVAGFIAMLTGYT
SSLVLMFQAGQAAGLSAGQISSWIWALSIGMAICSIGLSLRYRTPVVVAWSTPGAALLITSLPGVPYAEAIGAFIFASAL
IALCGITGSFDRLMRRVPASLAAALLAGVLFNIGSEIFRAVGVQPLLVLGMFFSYLLTKRLQPRYAVLAALLVGCLIAGV
TGLLDFQRFSLQIAVPVWTTPAFSFAAVFSIGIPLFVIAMASQNMPGLAVLRAEGYQVPASPLISTTGIASVLLAPFGSH
GIHLAAITMAICAGPEAHPDPDKRYTAAAWCGVFYGIAGIFGATLAALFAAFPAALVLSIAALALLGSIGSGLTQAMQQP
NEREAALITFMVTASGLTLFGIGAALWGLIAGVITLLILRRRN

Sequences:

>Translated_443_residues
MTGSSHCRLLRPTRLWLYRDAGQRSPLGLYHRPRQPSASHRSAEEQQRMNENSRSALRPLSDSSPSTVVAGFIAMLTGYT
SSLVLMFQAGQAAGLSAGQISSWIWALSIGMAICSIGLSLRYRTPVVVAWSTPGAALLITSLPGVPYAEAIGAFIFASAL
IALCGITGSFDRLMRRVPASLAAALLAGVLFNIGSEIFRAVGVQPLLVLGMFFSYLLTKRLQPRYAVLAALLVGCLIAGV
TGLLDFQRFSLQIAVPVWTTPAFSFAAVFSIGIPLFVIAMASQNMPGLAVLRAEGYQVPASPLISTTGIASVLLAPFGSH
GIHLAAITMAICAGPEAHPDPDKRYTAAAWCGVFYGIAGIFGATLAALFAAFPAALVLSIAALALLGSIGSGLTQAMQQP
NEREAALITFMVTASGLTLFGIGAALWGLIAGVITLLILRRRN
>Mature_442_residues
TGSSHCRLLRPTRLWLYRDAGQRSPLGLYHRPRQPSASHRSAEEQQRMNENSRSALRPLSDSSPSTVVAGFIAMLTGYTS
SLVLMFQAGQAAGLSAGQISSWIWALSIGMAICSIGLSLRYRTPVVVAWSTPGAALLITSLPGVPYAEAIGAFIFASALI
ALCGITGSFDRLMRRVPASLAAALLAGVLFNIGSEIFRAVGVQPLLVLGMFFSYLLTKRLQPRYAVLAALLVGCLIAGVT
GLLDFQRFSLQIAVPVWTTPAFSFAAVFSIGIPLFVIAMASQNMPGLAVLRAEGYQVPASPLISTTGIASVLLAPFGSHG
IHLAAITMAICAGPEAHPDPDKRYTAAAWCGVFYGIAGIFGATLAALFAAFPAALVLSIAALALLGSIGSGLTQAMQQPN
EREAALITFMVTASGLTLFGIGAALWGLIAGVITLLILRRRN

Specific function: Unknown

COG id: COG3135

COG function: function code Q; Uncharacterized protein involved in benzoate metabolism

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87081909, Length=382, Percent_Identity=48.4293193717278, Blast_Score=345, Evalue=3e-96,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004711 [H]

Pfam domain/function: PF03594 BenE [H]

EC number: NA

Molecular weight: Translated: 46535; Mature: 46404

Theoretical pI: Translated: 10.21; Mature: 10.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGSSHCRLLRPTRLWLYRDAGQRSPLGLYHRPRQPSASHRSAEEQQRMNENSRSALRPL
CCCCCCCEEECCCEEEEEECCCCCCCCCCCCCCCCCCCHHCCHHHHHHHCCCHHHHHCCC
SDSSPSTVVAGFIAMLTGYTSSLVLMFQAGQAAGLSAGQISSWIWALSIGMAICSIGLSL
CCCCCHHHHHHHHHHHHCCHHHHEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEE
RYRTPVVVAWSTPGAALLITSLPGVPYAEAIGAFIFASALIALCGITGSFDRLMRRVPAS
EECCCEEEEECCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCHH
LAAALLAGVLFNIGSEIFRAVGVQPLLVLGMFFSYLLTKRLQPRYAVLAALLVGCLIAGV
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
TGLLDFQRFSLQIAVPVWTTPAFSFAAVFSIGIPLFVIAMASQNMPGLAVLRAEGYQVPA
HHHHHHHHEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCC
SPLISTTGIASVLLAPFGSHGIHLAAITMAICAGPEAHPDPDKRYTAAAWCGVFYGIAGI
CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
FGATLAALFAAFPAALVLSIAALALLGSIGSGLTQAMQQPNEREAALITFMVTASGLTLF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHEEEEHHHCCCHHH
GIGAALWGLIAGVITLLILRRRN
HHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TGSSHCRLLRPTRLWLYRDAGQRSPLGLYHRPRQPSASHRSAEEQQRMNENSRSALRPL
CCCCCCEEECCCEEEEEECCCCCCCCCCCCCCCCCCCHHCCHHHHHHHCCCHHHHHCCC
SDSSPSTVVAGFIAMLTGYTSSLVLMFQAGQAAGLSAGQISSWIWALSIGMAICSIGLSL
CCCCCHHHHHHHHHHHHCCHHHHEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEE
RYRTPVVVAWSTPGAALLITSLPGVPYAEAIGAFIFASALIALCGITGSFDRLMRRVPAS
EECCCEEEEECCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCHH
LAAALLAGVLFNIGSEIFRAVGVQPLLVLGMFFSYLLTKRLQPRYAVLAALLVGCLIAGV
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
TGLLDFQRFSLQIAVPVWTTPAFSFAAVFSIGIPLFVIAMASQNMPGLAVLRAEGYQVPA
HHHHHHHHEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCC
SPLISTTGIASVLLAPFGSHGIHLAAITMAICAGPEAHPDPDKRYTAAAWCGVFYGIAGI
CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
FGATLAALFAAFPAALVLSIAALALLGSIGSGLTQAMQQPNEREAALITFMVTASGLTLF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHEEEEHHHCCCHHH
GIGAALWGLIAGVITLLILRRRN
HHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]