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The map label for this gene is rhaS [H]

Identifier: 146282612

GI number: 146282612

Start: 2470248

End: 2471381

Strand: Direct

Name: rhaS [H]

Synonym: PST_2264

Alternate gene names: 146282612

Gene position: 2470248-2471381 (Clockwise)

Preceding gene: 146282610

Following gene: 146282614

Centisome position: 54.08

GC content: 67.2

Gene sequence:

>1134_bases
TTGCGCCCCGAACTTTCGCTGGCTTGCTCTGGCTGTCGGACTCTTGCGCGCAAAAGCCGGATCCAGACATCTGCGGACCG
CAGGACCGCACAATGGTGGGCTGAAGTCCGCCCTGCGGTTCGCTCCGTGTTCGATCCGCGGCACCGGGCGCCGCTGCGCT
ACGCTAACGACCCAGCCGCTTGCCGTCTTGTCCTGGAGTTTCACGTGCCTCGGCCATCCGACGCCCCGCCCTTGCCTGCT
TCCGGCCGTGCCCCGGCCCAGGCCATGGGCCGTTACCTGCCCGCCGAAACGCGGCTGACCGAGCTGCCAATGCCGACCCA
AGACGTCGTGCTGCAGCTGTTCAGCCACCGTTCGGTCGAAGTACCGATCGGCGTGCCGGCGGTGGTGGAGCCGTTGCTGG
TCCTGGTGCTGGCCGGTGCTGCGCAGGTCGAGGAGCGCACACCGGGCGGCCAGTGGAGCACGATGAACGTCCGTGCGGGC
GACTTCTTCCTGACCGACACGGACGAGCCCTATGAGATGCGCTGGCAAGCGCTGGAGGGCGAGCGCTTCGAGGTGATGCA
CCTGTATCTCGGCCTGCCGCTCATCGACCAGGCGGCGCGTGAACTGCTGGGGCCGCAGAGCACCAGCGTTGCCTTGCTGG
ACGTTTCCGGTGCACGGGACGAGACGGTGCGTTGGTTGATGGATCAGCTGCGTCGCGAACTGCTCGACCGGCCCCAAGCC
AGCCCGCTGTACGTACGCGGCCTGGCCCAGGCACTGGCAGTGCATCTGCTGCGCCACTATCGCGACCCGCACGGCGGCGT
CCGCCGCAGCAATGCCCTGCCCGCCTACAAGCTGCGCAAGGTCATCGGGGTGATGAACGAACGGCTGGCCGAGGAGTTCA
GCCTGGCGGCGCTGGCGCAGGTCGTCGAACTGAGCGAGTACCACTTCAGCCGGATGTTCAAGCGGGCCACCGGCCTTTCA
CCGTCGCAGTACTTCATCGGGCTGCGCATGGCGCGGGCGCGGCAGCTGCTGCTTGAAACACCGCGCAGCATCATCGACAT
CGGGCTGGAGGTGGGCTACTCGAGCCCCAGCCATTTCTCCCAGGTGTTTCGTCGTGAGGTGGGCGTCACCCCCAGCATCT
ATCGCCAGGGCTGA

Upstream 100 bases:

>100_bases
TCCGCGATGACGCTATGCTTCGAATCGCTCATGCTGATTCCTCCGGTATATATGGCGCCATGGGCGCCCTGGTTATCGAC
AGGTTCAGTCTTGCTCATCG

Downstream 100 bases:

>100_bases
AAGAAATTCCGCAGGCGCAGAAACACGAAACCCCGGCCGTGATGACCGGGGTTTCGCACACGGAGCCCGGCGTTCGCCGG
ACTCGTCCTACAGATCGTCG

Product: transcriptional regulator

Products: NA

Alternate protein names: L-rhamnose operon regulatory protein rhaS [H]

Number of amino acids: Translated: 377; Mature: 377

Protein sequence:

>377_residues
MRPELSLACSGCRTLARKSRIQTSADRRTAQWWAEVRPAVRSVFDPRHRAPLRYANDPAACRLVLEFHVPRPSDAPPLPA
SGRAPAQAMGRYLPAETRLTELPMPTQDVVLQLFSHRSVEVPIGVPAVVEPLLVLVLAGAAQVEERTPGGQWSTMNVRAG
DFFLTDTDEPYEMRWQALEGERFEVMHLYLGLPLIDQAARELLGPQSTSVALLDVSGARDETVRWLMDQLRRELLDRPQA
SPLYVRGLAQALAVHLLRHYRDPHGGVRRSNALPAYKLRKVIGVMNERLAEEFSLAALAQVVELSEYHFSRMFKRATGLS
PSQYFIGLRMARARQLLLETPRSIIDIGLEVGYSSPSHFSQVFRREVGVTPSIYRQG

Sequences:

>Translated_377_residues
MRPELSLACSGCRTLARKSRIQTSADRRTAQWWAEVRPAVRSVFDPRHRAPLRYANDPAACRLVLEFHVPRPSDAPPLPA
SGRAPAQAMGRYLPAETRLTELPMPTQDVVLQLFSHRSVEVPIGVPAVVEPLLVLVLAGAAQVEERTPGGQWSTMNVRAG
DFFLTDTDEPYEMRWQALEGERFEVMHLYLGLPLIDQAARELLGPQSTSVALLDVSGARDETVRWLMDQLRRELLDRPQA
SPLYVRGLAQALAVHLLRHYRDPHGGVRRSNALPAYKLRKVIGVMNERLAEEFSLAALAQVVELSEYHFSRMFKRATGLS
PSQYFIGLRMARARQLLLETPRSIIDIGLEVGYSSPSHFSQVFRREVGVTPSIYRQG
>Mature_377_residues
MRPELSLACSGCRTLARKSRIQTSADRRTAQWWAEVRPAVRSVFDPRHRAPLRYANDPAACRLVLEFHVPRPSDAPPLPA
SGRAPAQAMGRYLPAETRLTELPMPTQDVVLQLFSHRSVEVPIGVPAVVEPLLVLVLAGAAQVEERTPGGQWSTMNVRAG
DFFLTDTDEPYEMRWQALEGERFEVMHLYLGLPLIDQAARELLGPQSTSVALLDVSGARDETVRWLMDQLRRELLDRPQA
SPLYVRGLAQALAVHLLRHYRDPHGGVRRSNALPAYKLRKVIGVMNERLAEEFSLAALAQVVELSEYHFSRMFKRATGLS
PSQYFIGLRMARARQLLLETPRSIIDIGLEVGYSSPSHFSQVFRREVGVTPSIYRQG

Specific function: Activates expression of the rhaBAD and rhaT operons [H]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 HTH araC/xylS-type DNA-binding domains [H]

Homologues:

Organism=Escherichia coli, GI1790339, Length=103, Percent_Identity=35.9223300970874, Blast_Score=72, Evalue=7e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 42346; Mature: 42346

Theoretical pI: Translated: 9.66; Mature: 9.66

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRPELSLACSGCRTLARKSRIQTSADRRTAQWWAEVRPAVRSVFDPRHRAPLRYANDPAA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCCHHH
CRLVLEFHVPRPSDAPPLPASGRAPAQAMGRYLPAETRLTELPMPTQDVVLQLFSHRSVE
EEEEEEEECCCCCCCCCCCCCCCCCHHHHHCCCCCCCCHHCCCCCHHHHHHHHHHCCCEE
VPIGVPAVVEPLLVLVLAGAAQVEERTPGGQWSTMNVRAGDFFLTDTDEPYEMRWQALEG
CCCCCHHHHHHHHHHHHHCHHHHHHCCCCCCEEEEEEECCCEEECCCCCHHHHHHHHCCC
ERFEVMHLYLGLPLIDQAARELLGPQSTSVALLDVSGARDETVRWLMDQLRRELLDRPQA
CCCEEHHHHHCCCHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCC
SPLYVRGLAQALAVHLLRHYRDPHGGVRRSNALPAYKLRKVIGVMNERLAEEFSLAALAQ
CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
VVELSEYHFSRMFKRATGLSPSQYFIGLRMARARQLLLETPRSIIDIGLEVGYSSPSHFS
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHH
QVFRREVGVTPSIYRQG
HHHHHHHCCCHHHHCCC
>Mature Secondary Structure
MRPELSLACSGCRTLARKSRIQTSADRRTAQWWAEVRPAVRSVFDPRHRAPLRYANDPAA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCCHHH
CRLVLEFHVPRPSDAPPLPASGRAPAQAMGRYLPAETRLTELPMPTQDVVLQLFSHRSVE
EEEEEEEECCCCCCCCCCCCCCCCCHHHHHCCCCCCCCHHCCCCCHHHHHHHHHHCCCEE
VPIGVPAVVEPLLVLVLAGAAQVEERTPGGQWSTMNVRAGDFFLTDTDEPYEMRWQALEG
CCCCCHHHHHHHHHHHHHCHHHHHHCCCCCCEEEEEEECCCEEECCCCCHHHHHHHHCCC
ERFEVMHLYLGLPLIDQAARELLGPQSTSVALLDVSGARDETVRWLMDQLRRELLDRPQA
CCCEEHHHHHCCCHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCC
SPLYVRGLAQALAVHLLRHYRDPHGGVRRSNALPAYKLRKVIGVMNERLAEEFSLAALAQ
CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
VVELSEYHFSRMFKRATGLSPSQYFIGLRMARARQLLLETPRSIIDIGLEVGYSSPSHFS
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHH
QVFRREVGVTPSIYRQG
HHHHHHHCCCHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA