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The map label for this gene is ybfI [H]

Identifier: 145301115

GI number: 145301115

Start: 4583562

End: 4584410

Strand: Direct

Name: ybfI [H]

Synonym: ASA_4284

Alternate gene names: 145301115

Gene position: 4583562-4584410 (Clockwise)

Preceding gene: 145301114

Following gene: 145301117

Centisome position: 97.47

GC content: 62.19

Gene sequence:

>849_bases
ATGAGCAGGGCCAGGGCAGAGGCGGATCACCGCAGCTTCTGGCGTGACCCTGCCCTGCCGTTCATAGAGGCGCGAGCGGT
GCAGGATGGCCGCCGCGTCTGCTATGAAAAACACAGCCACGCCCATTTCTCCATTGGCGCCATCACTGGTGGTCACAGTC
ACTATCTCAACCAGCAGACAAAACAGGAGGTCAACGCAGGCACCCTGGTACTGATGAACCCGGAAGAGGTACATGCCTGC
AACCCCATCGCCGATCATCCCTGGTCTTATCTGATGTTCTACCTCGATACCGACTGGCTGCGCGGCCAGCAGGAGGAGGC
CGGGCTGGGGGCCCATTTTCGTCCCTTCGACATGACGGCCAGCCGGGATCCCGTGCTGTATGCAGGTTTGCTACGCCTCT
ATCGTACTTTGCAAGATGACCAGCAAGATCGCCTCGCCAAGGAGGTCGTCTGTCACCAGTTCAGCCACCAGCTGCTGGCA
AGGCTCACGCCCGCCAGATGGAGCGAGCCACCGCCCCTGCATCTGAGGCGCGCCGCCGAGCTGATAAAGGACGAGTATGC
GACGCCCCTCACCTTGCAGCACCTGAGCACAGTCGCCGGGCTGACCCCATCCCATTTGGTGCGAGTATTCAGCCGCCATT
ACGGCATGACCCCGCACGCTTACCTGCTCAACCAGCGGATACGCCAGGCCCGAGCCCTGCTCGCTCAGGGACGGCCCCTG
GTCGAGGTGGCATTGGCGACGGGCTTCTCCGATCAGGCCCACTTCCAGCGCCAGTTCAAGCGGCTGGTCGCCGCGACCCC
GGGTCAATACCAGTCGCAGTGCCTTCCTCAAGGTTCCAGAACAAGGTAA

Upstream 100 bases:

>100_bases
GGGCTATGTGCTGGAAAACGGCCACGTGGTGCTGCAAGACTCGGGGGCTGCTCTGCTGGCCAACCCGGCCGTTCGGCAGG
CCTACCTGGGTGGTTAACCC

Downstream 100 bases:

>100_bases
CCGGCACTGAGCAACAGCAACATGGCCATCGCCCGGTTGAACCAGCGCAAGCGGTGAGGCGAGAGCAAAACTGCCTGCAG
ACAGCTGCCGACATAGGCCC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 282; Mature: 281

Protein sequence:

>282_residues
MSRARAEADHRSFWRDPALPFIEARAVQDGRRVCYEKHSHAHFSIGAITGGHSHYLNQQTKQEVNAGTLVLMNPEEVHAC
NPIADHPWSYLMFYLDTDWLRGQQEEAGLGAHFRPFDMTASRDPVLYAGLLRLYRTLQDDQQDRLAKEVVCHQFSHQLLA
RLTPARWSEPPPLHLRRAAELIKDEYATPLTLQHLSTVAGLTPSHLVRVFSRHYGMTPHAYLLNQRIRQARALLAQGRPL
VEVALATGFSDQAHFQRQFKRLVAATPGQYQSQCLPQGSRTR

Sequences:

>Translated_282_residues
MSRARAEADHRSFWRDPALPFIEARAVQDGRRVCYEKHSHAHFSIGAITGGHSHYLNQQTKQEVNAGTLVLMNPEEVHAC
NPIADHPWSYLMFYLDTDWLRGQQEEAGLGAHFRPFDMTASRDPVLYAGLLRLYRTLQDDQQDRLAKEVVCHQFSHQLLA
RLTPARWSEPPPLHLRRAAELIKDEYATPLTLQHLSTVAGLTPSHLVRVFSRHYGMTPHAYLLNQRIRQARALLAQGRPL
VEVALATGFSDQAHFQRQFKRLVAATPGQYQSQCLPQGSRTR
>Mature_281_residues
SRARAEADHRSFWRDPALPFIEARAVQDGRRVCYEKHSHAHFSIGAITGGHSHYLNQQTKQEVNAGTLVLMNPEEVHACN
PIADHPWSYLMFYLDTDWLRGQQEEAGLGAHFRPFDMTASRDPVLYAGLLRLYRTLQDDQQDRLAKEVVCHQFSHQLLAR
LTPARWSEPPPLHLRRAAELIKDEYATPLTLQHLSTVAGLTPSHLVRVFSRHYGMTPHAYLLNQRIRQARALLAQGRPLV
EVALATGFSDQAHFQRQFKRLVAATPGQYQSQCLPQGSRTR

Specific function: This Protein Controls The Expression Of At Least Six Genes That Are Involved In The Transport And Catabolism Of L-Arabinose. It Regulates Initiation Of Transcription Of The Arabad Operon And It Also Controls Its Own Synthesis. The L- Arabinose Operon Dis

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786251, Length=231, Percent_Identity=25.1082251082251, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 32170; Mature: 32039

Theoretical pI: Translated: 9.34; Mature: 9.34

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRARAEADHRSFWRDPALPFIEARAVQDGRRVCYEKHSHAHFSIGAITGGHSHYLNQQT
CCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCHHHHHCHHH
KQEVNAGTLVLMNPEEVHACNPIADHPWSYLMFYLDTDWLRGQQEEAGLGAHFRPFDMTA
HHHCCCCEEEEECCHHHHCCCCCCCCCHHHEEHEEECHHHCCCCHHCCCCCCCCCCCCCC
SRDPVLYAGLLRLYRTLQDDQQDRLAKEVVCHQFSHQLLARLTPARWSEPPPLHLRRAAE
CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
LIKDEYATPLTLQHLSTVAGLTPSHLVRVFSRHYGMTPHAYLLNQRIRQARALLAQGRPL
HHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCC
VEVALATGFSDQAHFQRQFKRLVAATPGQYQSQCLPQGSRTR
EEHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCC
>Mature Secondary Structure 
SRARAEADHRSFWRDPALPFIEARAVQDGRRVCYEKHSHAHFSIGAITGGHSHYLNQQT
CCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCHHHHHCHHH
KQEVNAGTLVLMNPEEVHACNPIADHPWSYLMFYLDTDWLRGQQEEAGLGAHFRPFDMTA
HHHCCCCEEEEECCHHHHCCCCCCCCCHHHEEHEEECHHHCCCCHHCCCCCCCCCCCCCC
SRDPVLYAGLLRLYRTLQDDQQDRLAKEVVCHQFSHQLLARLTPARWSEPPPLHLRRAAE
CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
LIKDEYATPLTLQHLSTVAGLTPSHLVRVFSRHYGMTPHAYLLNQRIRQARALLAQGRPL
HHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCC
VEVALATGFSDQAHFQRQFKRLVAATPGQYQSQCLPQGSRTR
EEHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]