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The map label for this gene is ydiK [H]

Identifier: 145300900

GI number: 145300900

Start: 4346457

End: 4347545

Strand: Direct

Name: ydiK [H]

Synonym: ASA_4046

Alternate gene names: 145300900

Gene position: 4346457-4347545 (Clockwise)

Preceding gene: 145300899

Following gene: 145300901

Centisome position: 92.43

GC content: 60.7

Gene sequence:

>1089_bases
ATGAATATGAAAAAAGTGGATTTAGCCAAGATCACGCTGGGGGTGCTGTTTCTCAGCATTCTCATCATCTCGTGCTTCAT
GGTGCTGCGCCCCTTCCTGCCTGCGCTGGTGTGGGCCACCATGATCACCATAGCCACCTGGCCACTGATGCGGATGGTAC
AGCGCCTGCTGTGGGGCAAGCGCATGCTGGCAGCCCTCTTCATGACGCTGGTACTGCTGCTGATGTTTGTTATTCCGCTG
TTCATGGCACTGGCCAATGTGGCGGAGCAAGCCCCCATGCTGATCGAGCTGGGCACCACCATCAGCCACTCACCGCCCCC
CGAGCTGCTCTGGCTGCAACAGATCCCTCTGGTGGGCACCAAGCTGTATGAGTTCTGGCAGCAGATCCTGGCGAGCGGCG
GCCAGGTACTGTTTACCAAGCTGGCCCCCTACTTCGGTCAGACAGCCCGCTGGCTCGCCTCCCAGGCAGGCAATCTGGGC
TTGCTGTTCGTGCACTTCCTGCTGACAGTCGGGATCTGCGGCGTGCTATATCACTCGGGTGAGATGGTGGCGACCGGCAT
TCGCCGCTTCGCCCACCGCCTTGCTGGCGAGCGCGGTGACAATGCCACAGTGCTCGCCTCCCAGGCGATCCGCGCCGTGG
CCATGGGCGTCGTGGTGACCGCTCTGGTGCAATCATCCGTGGCCGGTATCGGCCTGCTGATTGCAGGCATCCCCTACACC
ATGGTGCTGGTGGTGGTGATGTTCCTGCTGATCGTGGCCCAGATCGGCCCCTTCCCTGTATTGCTGGCCTGTATCGGTTA
TCTCTACTGGAGCGGTGACACCACCTGGGGCACCTTCCTGCTGGTATGGTCACTGTTTGCGGGCACCATGGACAACATAC
TGCGTCCATTCCTCATCAAACGAGGGGCGGATTTGCCGCTCATCCTGATACTGGTGGGGGTTATCGGCGGCTTGCTGACC
ATGGGAATTATCGGTCTCTTCATCGGCCCGGTCGTGCTGGCGGTGGGTTACACCCTGCTGGATGCCTGGGTGAGAGAAGA
TGAACAAGCCGCAGCAGAGCCGCTGCTTGCCCCGCCAAAGGCGGAGTGA

Upstream 100 bases:

>100_bases
GTTGCCTGGGGCTCTGGTTGAGCGCCGGCCTCTGGTGGATACTCTCACTCATGAACTCTGACCCGTTACCCAGGGGCTCC
GGCTCCGACAAGGGATTGTT

Downstream 100 bases:

>100_bases
AGGTTTGGCAATAATTAGCTGATACAAAGAGCCGCCCATCGGGCGGCTCTTCTGTTTCCAATGACCTGAATGGCATTACC
CAGCCTCTGAGGCAGGTCAC

Product: permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 362; Mature: 362

Protein sequence:

>362_residues
MNMKKVDLAKITLGVLFLSILIISCFMVLRPFLPALVWATMITIATWPLMRMVQRLLWGKRMLAALFMTLVLLLMFVIPL
FMALANVAEQAPMLIELGTTISHSPPPELLWLQQIPLVGTKLYEFWQQILASGGQVLFTKLAPYFGQTARWLASQAGNLG
LLFVHFLLTVGICGVLYHSGEMVATGIRRFAHRLAGERGDNATVLASQAIRAVAMGVVVTALVQSSVAGIGLLIAGIPYT
MVLVVVMFLLIVAQIGPFPVLLACIGYLYWSGDTTWGTFLLVWSLFAGTMDNILRPFLIKRGADLPLILILVGVIGGLLT
MGIIGLFIGPVVLAVGYTLLDAWVREDEQAAAEPLLAPPKAE

Sequences:

>Translated_362_residues
MNMKKVDLAKITLGVLFLSILIISCFMVLRPFLPALVWATMITIATWPLMRMVQRLLWGKRMLAALFMTLVLLLMFVIPL
FMALANVAEQAPMLIELGTTISHSPPPELLWLQQIPLVGTKLYEFWQQILASGGQVLFTKLAPYFGQTARWLASQAGNLG
LLFVHFLLTVGICGVLYHSGEMVATGIRRFAHRLAGERGDNATVLASQAIRAVAMGVVVTALVQSSVAGIGLLIAGIPYT
MVLVVVMFLLIVAQIGPFPVLLACIGYLYWSGDTTWGTFLLVWSLFAGTMDNILRPFLIKRGADLPLILILVGVIGGLLT
MGIIGLFIGPVVLAVGYTLLDAWVREDEQAAAEPLLAPPKAE
>Mature_362_residues
MNMKKVDLAKITLGVLFLSILIISCFMVLRPFLPALVWATMITIATWPLMRMVQRLLWGKRMLAALFMTLVLLLMFVIPL
FMALANVAEQAPMLIELGTTISHSPPPELLWLQQIPLVGTKLYEFWQQILASGGQVLFTKLAPYFGQTARWLASQAGNLG
LLFVHFLLTVGICGVLYHSGEMVATGIRRFAHRLAGERGDNATVLASQAIRAVAMGVVVTALVQSSVAGIGLLIAGIPYT
MVLVVVMFLLIVAQIGPFPVLLACIGYLYWSGDTTWGTFLLVWSLFAGTMDNILRPFLIKRGADLPLILILVGVIGGLLT
MGIIGLFIGPVVLAVGYTLLDAWVREDEQAAAEPLLAPPKAE

Specific function: Unknown

COG id: COG0628

COG function: function code R; Predicted permease

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0118 (perM) family [H]

Homologues:

Organism=Escherichia coli, GI1787979, Length=348, Percent_Identity=49.7126436781609, Blast_Score=334, Evalue=5e-93,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002549 [H]

Pfam domain/function: PF01594 UPF0118 [H]

EC number: NA

Molecular weight: Translated: 39399; Mature: 39399

Theoretical pI: Translated: 9.12; Mature: 9.12

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNMKKVDLAKITLGVLFLSILIISCFMVLRPFLPALVWATMITIATWPLMRMVQRLLWGK
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RMLAALFMTLVLLLMFVIPLFMALANVAEQAPMLIELGTTISHSPPPELLWLQQIPLVGT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCHHHHHHCCHHHH
KLYEFWQQILASGGQVLFTKLAPYFGQTARWLASQAGNLGLLFVHFLLTVGICGVLYHSG
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCC
EMVATGIRRFAHRLAGERGDNATVLASQAIRAVAMGVVVTALVQSSVAGIGLLIAGIPYT
HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MVLVVVMFLLIVAQIGPFPVLLACIGYLYWSGDTTWGTFLLVWSLFAGTMDNILRPFLIK
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
RGADLPLILILVGVIGGLLTMGIIGLFIGPVVLAVGYTLLDAWVREDEQAAAEPLLAPPK
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCC
AE
CC
>Mature Secondary Structure
MNMKKVDLAKITLGVLFLSILIISCFMVLRPFLPALVWATMITIATWPLMRMVQRLLWGK
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RMLAALFMTLVLLLMFVIPLFMALANVAEQAPMLIELGTTISHSPPPELLWLQQIPLVGT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCHHHHHHCCHHHH
KLYEFWQQILASGGQVLFTKLAPYFGQTARWLASQAGNLGLLFVHFLLTVGICGVLYHSG
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCC
EMVATGIRRFAHRLAGERGDNATVLASQAIRAVAMGVVVTALVQSSVAGIGLLIAGIPYT
HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MVLVVVMFLLIVAQIGPFPVLLACIGYLYWSGDTTWGTFLLVWSLFAGTMDNILRPFLIK
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
RGADLPLILILVGVIGGLLTMGIIGLFIGPVVLAVGYTLLDAWVREDEQAAAEPLLAPPK
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCC
AE
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]