Click here to switch to the map view.

The map label for this gene is ybhS [H]

Identifier: 145300560

GI number: 145300560

Start: 3978898

End: 3979992

Strand: Direct

Name: ybhS [H]

Synonym: ASA_3692

Alternate gene names: 145300560

Gene position: 3978898-3979992 (Clockwise)

Preceding gene: 145300559

Following gene: 145300563

Centisome position: 84.61

GC content: 61.37

Gene sequence:

>1095_bases
ATGAACAGTCTGCGACGGCTCTGGGCCATTACCCAGAAAGAGCTCAGGCAGCTGGCGCGGGATAGACTGACCTTTGGCAT
GGTGGTGATGATACCCCTGATCCAGCTGCTGCTGTTCGGCTACGCCATCAACACGGATGTGCGCCACATACCGGTGGGGC
TGGTGGAGATGAGCCAGAGCGTGCCGGGACGGCTGCTGGTGGAGGCGGTGAAGGCGAGCCAGGTGGTGCGCATAGAACGT
CATTACGTGGGGGTACAGGAGGCGGAGGCCGCCCTGACTCGGGGCGAGGTGAGGGCCGTGCTGGTGCTACCCCCTGACTT
GAGCCGCCGCCTCAGCGCCGGTGAGACGGCAGGACAGTGGCTGGTGGATGGCTCGGATACCATGATAGCCGGGGCCCTGC
TCGGCCTTCGCAACATGCCGCTCTCGGATCTGAAACCGGGCCTTGAATCTGCCCCACCCACTTTCGAGACAGTGCTCTAC
TTCAATCCGGCTAGGCGATCTGCAGTCAACATAGTGCCCGGTTTGCTCGGGGTGATCCTCACCATGACCATGATCATGTT
CACCTCGGCGGCCATAGTGCGCGAACGGGAGCGCGGCAATCTGGAACTGCTCATCACTACCCCGGTCAGCTCCATGGAGC
TGATGCTTGGCAAGATACTGCCCTATATCGGGGTGGGGCTGGTCCAGGTGGCCATCATACTCGGGCTCGGCCACTTCATC
TTTGACGTACCGATCAACGGGGCACTCAGTCAGGTGCTGCTGGCTACCCTGTTATTTATTGCCGCCAGCCTGACTTTGGG
GCTGCTCATCTCCACTCTGGCACAGACCCAGTTGCAGGCGATGCAGATGACGGTGTTCATACTGCTGCCATCCATATTGC
TGTCGGGCTTCATGTTTCCCTATGAGGGGATGCCGGTGGCGGCCCAGTGGATTGCAGAGGTGCTGCCTGCCACCCACTTC
ATGAGGCTGATCAGGGGCATAGTGCTGCGGGGCGGGGAGCTGTCGGAGTTGCTGCCGGATGTGCTCTGGCTGGCGGGGTT
CACCCTGCTGGTGCTGACCCTGGCCGCCCACAGGTTCAAGAAGAGCCTGGATTGA

Upstream 100 bases:

>100_bases
TGCAGCAGGCCTGTCCGGCCTTGAGCGGGGCTGCCATGGCGCTGGTCAGGCCCAGTCTGGAGGATGTGTTTGTCAGCTGT
ACCGGTCAGGAGCCAGGGGC

Downstream 100 bases:

>100_bases
AGCGTACGCCGATGCCAGATGCGCGGGTCACTGCGTTTGATGCCTAGCTGCTGCGCTGCGTCGTTCTGGGCAGGGTGAGG
TAGTCGCCAAGCACGGGCAA

Product: ABC-type multidrug transporter, permease component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 364; Mature: 364

Protein sequence:

>364_residues
MNSLRRLWAITQKELRQLARDRLTFGMVVMIPLIQLLLFGYAINTDVRHIPVGLVEMSQSVPGRLLVEAVKASQVVRIER
HYVGVQEAEAALTRGEVRAVLVLPPDLSRRLSAGETAGQWLVDGSDTMIAGALLGLRNMPLSDLKPGLESAPPTFETVLY
FNPARRSAVNIVPGLLGVILTMTMIMFTSAAIVRERERGNLELLITTPVSSMELMLGKILPYIGVGLVQVAIILGLGHFI
FDVPINGALSQVLLATLLFIAASLTLGLLISTLAQTQLQAMQMTVFILLPSILLSGFMFPYEGMPVAAQWIAEVLPATHF
MRLIRGIVLRGGELSELLPDVLWLAGFTLLVLTLAAHRFKKSLD

Sequences:

>Translated_364_residues
MNSLRRLWAITQKELRQLARDRLTFGMVVMIPLIQLLLFGYAINTDVRHIPVGLVEMSQSVPGRLLVEAVKASQVVRIER
HYVGVQEAEAALTRGEVRAVLVLPPDLSRRLSAGETAGQWLVDGSDTMIAGALLGLRNMPLSDLKPGLESAPPTFETVLY
FNPARRSAVNIVPGLLGVILTMTMIMFTSAAIVRERERGNLELLITTPVSSMELMLGKILPYIGVGLVQVAIILGLGHFI
FDVPINGALSQVLLATLLFIAASLTLGLLISTLAQTQLQAMQMTVFILLPSILLSGFMFPYEGMPVAAQWIAEVLPATHF
MRLIRGIVLRGGELSELLPDVLWLAGFTLLVLTLAAHRFKKSLD
>Mature_364_residues
MNSLRRLWAITQKELRQLARDRLTFGMVVMIPLIQLLLFGYAINTDVRHIPVGLVEMSQSVPGRLLVEAVKASQVVRIER
HYVGVQEAEAALTRGEVRAVLVLPPDLSRRLSAGETAGQWLVDGSDTMIAGALLGLRNMPLSDLKPGLESAPPTFETVLY
FNPARRSAVNIVPGLLGVILTMTMIMFTSAAIVRERERGNLELLITTPVSSMELMLGKILPYIGVGLVQVAIILGLGHFI
FDVPINGALSQVLLATLLFIAASLTLGLLISTLAQTQLQAMQMTVFILLPSILLSGFMFPYEGMPVAAQWIAEVLPATHF
MRLIRGIVLRGGELSELLPDVLWLAGFTLLVLTLAAHRFKKSLD

Specific function: Unknown

COG id: COG0842

COG function: function code V; ABC-type multidrug transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

Organism=Escherichia coli, GI1787011, Length=350, Percent_Identity=30, Blast_Score=155, Evalue=3e-39,
Organism=Escherichia coli, GI48994943, Length=347, Percent_Identity=29.1066282420749, Blast_Score=148, Evalue=5e-37,
Organism=Escherichia coli, GI1787010, Length=359, Percent_Identity=27.5766016713092, Blast_Score=143, Evalue=2e-35,
Organism=Escherichia coli, GI226510979, Length=384, Percent_Identity=26.8229166666667, Blast_Score=104, Evalue=1e-23,
Organism=Drosophila melanogaster, GI24650855, Length=405, Percent_Identity=23.9506172839506, Blast_Score=91, Evalue=9e-19,
Organism=Drosophila melanogaster, GI24650853, Length=405, Percent_Identity=23.9506172839506, Blast_Score=91, Evalue=1e-18,
Organism=Drosophila melanogaster, GI85725260, Length=409, Percent_Identity=23.960880195599, Blast_Score=79, Evalue=4e-15,
Organism=Drosophila melanogaster, GI85725262, Length=409, Percent_Identity=23.960880195599, Blast_Score=79, Evalue=7e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000412
- InterPro:   IPR013525 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 39776; Mature: 39776

Theoretical pI: Translated: 9.43; Mature: 9.43

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSLRRLWAITQKELRQLARDRLTFGMVVMIPLIQLLLFGYAINTDVRHIPVGLVEMSQS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCHHHHHHHHC
VPGRLLVEAVKASQVVRIERHYVGVQEAEAALTRGEVRAVLVLPPDLSRRLSAGETAGQW
CCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCEEEEEEECCCHHHHHCCCCCCCCE
LVDGSDTMIAGALLGLRNMPLSDLKPGLESAPPTFETVLYFNPARRSAVNIVPGLLGVIL
EECCCCHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHH
TMTMIMFTSAAIVRERERGNLELLITTPVSSMELMLGKILPYIGVGLVQVAIILGLGHFI
HHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FDVPINGALSQVLLATLLFIAASLTLGLLISTLAQTQLQAMQMTVFILLPSILLSGFMFP
HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
YEGMPVAAQWIAEVLPATHFMRLIRGIVLRGGELSELLPDVLWLAGFTLLVLTLAAHRFK
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
KSLD
HCCC
>Mature Secondary Structure
MNSLRRLWAITQKELRQLARDRLTFGMVVMIPLIQLLLFGYAINTDVRHIPVGLVEMSQS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCHHHHHHHHC
VPGRLLVEAVKASQVVRIERHYVGVQEAEAALTRGEVRAVLVLPPDLSRRLSAGETAGQW
CCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCEEEEEEECCCHHHHHCCCCCCCCE
LVDGSDTMIAGALLGLRNMPLSDLKPGLESAPPTFETVLYFNPARRSAVNIVPGLLGVIL
EECCCCHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHH
TMTMIMFTSAAIVRERERGNLELLITTPVSSMELMLGKILPYIGVGLVQVAIILGLGHFI
HHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FDVPINGALSQVLLATLLFIAASLTLGLLISTLAQTQLQAMQMTVFILLPSILLSGFMFP
HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
YEGMPVAAQWIAEVLPATHFMRLIRGIVLRGGELSELLPDVLWLAGFTLLVLTLAAHRFK
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
KSLD
HCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]