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The map label for this gene is rbcR [H]

Identifier: 145300317

GI number: 145300317

Start: 3727292

End: 3728179

Strand: Direct

Name: rbcR [H]

Synonym: ASA_3439

Alternate gene names: 145300317

Gene position: 3727292-3728179 (Clockwise)

Preceding gene: 145300315

Following gene: 145300318

Centisome position: 79.26

GC content: 63.96

Gene sequence:

>888_bases
ATGGCTATGACCCTGGATGACTTGCAATTACTACTGGATGTGGTCAATCGCGGCAGCTTCAGCAAAGCGGCAGCCATTCG
TGGCTGGTCGCAACCCATGGTCAGCCAGCGGATCGCCGTACTGGAGCAGGCGCTGGGGCAGCCCCTGTTTCGCCGCCACA
GACGCGGAGCCACGCCCACTCCGGCTTGCGAGCAGTTTTTGCCTGCGGCGGCGGCAGCTCTGAGTGCACTGGAAGGGGGA
CGCCTGGCGATGCAGGGAGCACCGGCCCTGCCGCGCATCAAGCTCTCCTGCCTGCCCTCCCTGACCACAGTGGTATTTGG
CCCCCTGTTGCTGGCATTGGTAGACGAAGCATTCGAGATCCGCTGCAACACGGATCACTCCGGCATCATAATGCAGGAGC
TGCTGACCGGGGAGACCGACGTCGGCTTCATCCTCAAGTGCCCCGCCATAGCCGGTATCCAGCTCGAACTGCTCTACCGC
TCCCCCATCATAGCGGTGGCCTGCGCCACCCATCCGCTGGCAGGAAGACAAGGTTTAACCCTGCAGGATATCGCCAACGA
GCGGCTGGCACCCCAGCAGTGGGGCATCGGCTGTGACGAGCTGATCCTGCAACTGCGGCTGCTGCGTCAGGTAACGAGCC
CGCTGCACGCCATTCAGCCCGCCAGCGCAGCGCTGGAGCACGGCTTCATCACACTGATGCCGGCACTCGCCATCAGCCGG
GATCTGGAGTTTGGCCGCCTGGTCCAGCTGGATGTGATGGACCTGCCGCCGGATCACTGGGACGTGATGATGGCCTGGCG
TAGCGGCAAGCGGCCCAATCCTGCCAAGGAGCGGGTGCTGGAGGCAGCCAGAGCCCTTGCCCGGCGCTGGTCGGGCAAAT
CTGCATAA

Upstream 100 bases:

>100_bases
TGGCAATATGCCAATTCGCAACAATTGATACTGCTATTCTGGAAGGGCGCCAGATATAGTGGTAGCCGACAACTGGCTAT
ATTTCATATTGGATTACGTT

Downstream 100 bases:

>100_bases
AAAAGCGCCGGACAAGTCCGGCGCCAAACACTCAATCACATAGCTCAAGATCAGTAGCTTGCCTTGAGGGTCACTCCCGA
AAAGGCGCTGTAACCACTCA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 295; Mature: 294

Protein sequence:

>295_residues
MAMTLDDLQLLLDVVNRGSFSKAAAIRGWSQPMVSQRIAVLEQALGQPLFRRHRRGATPTPACEQFLPAAAAALSALEGG
RLAMQGAPALPRIKLSCLPSLTTVVFGPLLLALVDEAFEIRCNTDHSGIIMQELLTGETDVGFILKCPAIAGIQLELLYR
SPIIAVACATHPLAGRQGLTLQDIANERLAPQQWGIGCDELILQLRLLRQVTSPLHAIQPASAALEHGFITLMPALAISR
DLEFGRLVQLDVMDLPPDHWDVMMAWRSGKRPNPAKERVLEAARALARRWSGKSA

Sequences:

>Translated_295_residues
MAMTLDDLQLLLDVVNRGSFSKAAAIRGWSQPMVSQRIAVLEQALGQPLFRRHRRGATPTPACEQFLPAAAAALSALEGG
RLAMQGAPALPRIKLSCLPSLTTVVFGPLLLALVDEAFEIRCNTDHSGIIMQELLTGETDVGFILKCPAIAGIQLELLYR
SPIIAVACATHPLAGRQGLTLQDIANERLAPQQWGIGCDELILQLRLLRQVTSPLHAIQPASAALEHGFITLMPALAISR
DLEFGRLVQLDVMDLPPDHWDVMMAWRSGKRPNPAKERVLEAARALARRWSGKSA
>Mature_294_residues
AMTLDDLQLLLDVVNRGSFSKAAAIRGWSQPMVSQRIAVLEQALGQPLFRRHRRGATPTPACEQFLPAAAAALSALEGGR
LAMQGAPALPRIKLSCLPSLTTVVFGPLLLALVDEAFEIRCNTDHSGIIMQELLTGETDVGFILKCPAIAGIQLELLYRS
PIIAVACATHPLAGRQGLTLQDIANERLAPQQWGIGCDELILQLRLLRQVTSPLHAIQPASAALEHGFITLMPALAISRD
LEFGRLVQLDVMDLPPDHWDVMMAWRSGKRPNPAKERVLEAARALARRWSGKSA

Specific function: Trans-acting transcriptional regulator of RuBisCO genes (rbcAB) expression [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI157672245, Length=189, Percent_Identity=30.6878306878307, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI1788297, Length=242, Percent_Identity=26.8595041322314, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI87081904, Length=279, Percent_Identity=27.9569892473118, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32062; Mature: 31931

Theoretical pI: Translated: 8.15; Mature: 8.15

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAMTLDDLQLLLDVVNRGSFSKAAAIRGWSQPMVSQRIAVLEQALGQPLFRRHRRGATPT
CCCCHHHHHHHHHHHCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHCCCCCC
PACEQFLPAAAAALSALEGGRLAMQGAPALPRIKLSCLPSLTTVVFGPLLLALVDEAFEI
HHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEE
RCNTDHSGIIMQELLTGETDVGFILKCPAIAGIQLELLYRSPIIAVACATHPLAGRQGLT
EECCCCCHHHHHHHHCCCCCCCEEEECCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCC
LQDIANERLAPQQWGIGCDELILQLRLLRQVTSPLHAIQPASAALEHGFITLMPALAISR
HHHHHHCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHC
DLEFGRLVQLDVMDLPPDHWDVMMAWRSGKRPNPAKERVLEAARALARRWSGKSA
CCCCCCEEEEEEECCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
AMTLDDLQLLLDVVNRGSFSKAAAIRGWSQPMVSQRIAVLEQALGQPLFRRHRRGATPT
CCCHHHHHHHHHHHCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHCCCCCC
PACEQFLPAAAAALSALEGGRLAMQGAPALPRIKLSCLPSLTTVVFGPLLLALVDEAFEI
HHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEE
RCNTDHSGIIMQELLTGETDVGFILKCPAIAGIQLELLYRSPIIAVACATHPLAGRQGLT
EECCCCCHHHHHHHHCCCCCCCEEEECCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCC
LQDIANERLAPQQWGIGCDELILQLRLLRQVTSPLHAIQPASAALEHGFITLMPALAISR
HHHHHHCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHC
DLEFGRLVQLDVMDLPPDHWDVMMAWRSGKRPNPAKERVLEAARALARRWSGKSA
CCCCCCEEEEEEECCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1907267; 2708310 [H]