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The map label for this gene is ompC [H]

Identifier: 145300315

GI number: 145300315

Start: 3724741

End: 3725826

Strand: Direct

Name: ompC [H]

Synonym: ASA_3437

Alternate gene names: 145300315

Gene position: 3724741-3725826 (Clockwise)

Preceding gene: 145300314

Following gene: 145300317

Centisome position: 79.21

GC content: 57.73

Gene sequence:

>1086_bases
ATGAAGAAGACAGCATTGACTATGGCCATCTCCAGCGTGCTGCTGGCCGGCGGCGCCCAAGCCGCGACCGTCTATGACCA
GAACGACACCAAACTCGAGATAGGTGGCCGTGCTCAAGGCATGTACTACGGTACCGACAACAAGGATTCCGAGGGTGATC
AGAGCTACTTCCGTCTGCACGTTGCCGGCGAAACCAAGATCGACAACGAGCTAACCGCCTTCGGCTTTGCCGAGTACAAC
CTGCCGGTGTCCGGTTCTGACAACGACGAACTGCGTTATGCCTTCGCCGGTATCAAGCACGATCGTTTCGGTGCCTTCAG
CTATGGTCGTCAGGATGGCCTGTTCACCAAGGCGGTGAACAACTATACAGACGTGCTGCCGGAATGGGGTGGTGATGGCC
TGGGTAAAGACACCGAAGTATTCGGCACCGGCCGCACCAACGGTCTGGCTCAGTACATCTACACCTATCAGGGTCTGACC
CTGGGTGCCCAGTTCACCGGCAACAACGATCCGCAGAACGCTGGCCGTTCCGAGATGACCGGTCCGAACAGCACCTGGAA
TTCAGAAGGGTCTGCTGAAGGTTTCGCCCTGTCCGCCAACTATGACTTCGACATGGGTCTGAGTCTGGGTGCCGCCTACA
ACCAGGCTGGCAAGACCGACGAGCAGGCTGACAACGCTGCCTTCGGTGGCGACCGCGATGCCAAGCTGTACGGTGTGGGT
GCCAAGTACGAAGCCGGTGACCTCTACCTGGCCGCTACCTACTCCCACGGCGAAGACCACCTGTTCGTCAACAACGGCTA
CGCCGAGAAGATGGATGGCTACGAAGCCGTGGCCCAGTACACCTTCGGCAAGTTCAAGCCGTCTCTGGCCTACCTGCGTA
CCGACGTGAAAGACAATGCCCGCGGCATTGACGATACCGCCACCGAATATGTTTCCATCGGTGCCTGGTACAACTTCACC
GACAACTTCAATGCCTATGTTGATTACAAGATCAACCTGCTGGACAACGTCAACGGTACCCACACCAACTCGCTCGGCAA
GAACACCGACGACGTGGTCGCCGTGGCCCTGCAGTACAACTTCTAA

Upstream 100 bases:

>100_bases
TCCTATCAAGGTTCACAGATCTACTCTGGGCCATCGGAACAGCAACCGATCCTGCAGGACCGAGCACAGGTCCGACATTG
TTTACACAGAGGAAAAAACG

Downstream 100 bases:

>100_bases
GTCTTCCCTGAATTGCCTACTGTATTTTACCGGCCGCACTGCGGCCGGTTTTTTATTGCCTGTCAGATGTTGACCCGCGC
CAGACTCGGTTCGCGGTGAA

Product: outer membrane protein C

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 361; Mature: 361

Protein sequence:

>361_residues
MKKTALTMAISSVLLAGGAQAATVYDQNDTKLEIGGRAQGMYYGTDNKDSEGDQSYFRLHVAGETKIDNELTAFGFAEYN
LPVSGSDNDELRYAFAGIKHDRFGAFSYGRQDGLFTKAVNNYTDVLPEWGGDGLGKDTEVFGTGRTNGLAQYIYTYQGLT
LGAQFTGNNDPQNAGRSEMTGPNSTWNSEGSAEGFALSANYDFDMGLSLGAAYNQAGKTDEQADNAAFGGDRDAKLYGVG
AKYEAGDLYLAATYSHGEDHLFVNNGYAEKMDGYEAVAQYTFGKFKPSLAYLRTDVKDNARGIDDTATEYVSIGAWYNFT
DNFNAYVDYKINLLDNVNGTHTNSLGKNTDDVVAVALQYNF

Sequences:

>Translated_361_residues
MKKTALTMAISSVLLAGGAQAATVYDQNDTKLEIGGRAQGMYYGTDNKDSEGDQSYFRLHVAGETKIDNELTAFGFAEYN
LPVSGSDNDELRYAFAGIKHDRFGAFSYGRQDGLFTKAVNNYTDVLPEWGGDGLGKDTEVFGTGRTNGLAQYIYTYQGLT
LGAQFTGNNDPQNAGRSEMTGPNSTWNSEGSAEGFALSANYDFDMGLSLGAAYNQAGKTDEQADNAAFGGDRDAKLYGVG
AKYEAGDLYLAATYSHGEDHLFVNNGYAEKMDGYEAVAQYTFGKFKPSLAYLRTDVKDNARGIDDTATEYVSIGAWYNFT
DNFNAYVDYKINLLDNVNGTHTNSLGKNTDDVVAVALQYNF
>Mature_361_residues
MKKTALTMAISSVLLAGGAQAATVYDQNDTKLEIGGRAQGMYYGTDNKDSEGDQSYFRLHVAGETKIDNELTAFGFAEYN
LPVSGSDNDELRYAFAGIKHDRFGAFSYGRQDGLFTKAVNNYTDVLPEWGGDGLGKDTEVFGTGRTNGLAQYIYTYQGLT
LGAQFTGNNDPQNAGRSEMTGPNSTWNSEGSAEGFALSANYDFDMGLSLGAAYNQAGKTDEQADNAAFGGDRDAKLYGVG
AKYEAGDLYLAATYSHGEDHLFVNNGYAEKMDGYEAVAQYTFGKFKPSLAYLRTDVKDNARGIDDTATEYVSIGAWYNFT
DNFNAYVDYKINLLDNVNGTHTNSLGKNTDDVVAVALQYNF

Specific function: Forms Passive Diffusion Pores Which Allow Small Molecular Weight Hydrophilic Materials Across The Outer Membrane. [C]

COG id: COG3203

COG function: function code M; Outer membrane protein (porin)

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein. Note=When expressed in mutant CS384 [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Gram-negative porin family [H]

Homologues:

Organism=Escherichia coli, GI1788544, Length=373, Percent_Identity=39.142091152815, Blast_Score=213, Evalue=1e-56,
Organism=Escherichia coli, GI1786436, Length=373, Percent_Identity=35.3887399463807, Blast_Score=195, Evalue=5e-51,
Organism=Escherichia coli, GI1787641, Length=360, Percent_Identity=36.9444444444444, Blast_Score=191, Evalue=4e-50,
Organism=Escherichia coli, GI1787160, Length=385, Percent_Identity=33.7662337662338, Blast_Score=168, Evalue=6e-43,

Paralogues:

None

Copy number: 6020 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 19068 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001897
- InterPro:   IPR013793
- InterPro:   IPR001702 [H]

Pfam domain/function: PF00267 Porin_1 [H]

EC number: NA

Molecular weight: Translated: 39187; Mature: 39187

Theoretical pI: Translated: 4.25; Mature: 4.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKTALTMAISSVLLAGGAQAATVYDQNDTKLEIGGRAQGMYYGTDNKDSEGDQSYFRLH
CCCHHHHHHHHHHHHCCCCCEEEEEECCCCEEEECCCCCEEEECCCCCCCCCCCEEEEEE
VAGETKIDNELTAFGFAEYNLPVSGSDNDELRYAFAGIKHDRFGAFSYGRQDGLFTKAVN
EECCCCCCCCEEEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHH
NYTDVLPEWGGDGLGKDTEVFGTGRTNGLAQYIYTYQGLTLGAQFTGNNDPQNAGRSEMT
HHHHHCCCCCCCCCCCCCEEEECCCCCCHHEEEEEECCEEEEEEECCCCCCCCCCCCCCC
GPNSTWNSEGSAEGFALSANYDFDMGLSLGAAYNQAGKTDEQADNAAFGGDRDAKLYGVG
CCCCCCCCCCCCCCEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCEEEECC
AKYEAGDLYLAATYSHGEDHLFVNNGYAEKMDGYEAVAQYTFGKFKPSLAYLRTDVKDNA
CCEECCCEEEEEEECCCCCEEEEECCCHHHCCHHHHHHHHHHHCCCCCHHEEEECCCCCC
RGIDDTATEYVSIGAWYNFTDNFNAYVDYKINLLDNVNGTHTNSLGKNTDDVVAVALQYN
CCCCCCCHHEEEECEEEECCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEC
F
C
>Mature Secondary Structure
MKKTALTMAISSVLLAGGAQAATVYDQNDTKLEIGGRAQGMYYGTDNKDSEGDQSYFRLH
CCCHHHHHHHHHHHHCCCCCEEEEEECCCCEEEECCCCCEEEECCCCCCCCCCCEEEEEE
VAGETKIDNELTAFGFAEYNLPVSGSDNDELRYAFAGIKHDRFGAFSYGRQDGLFTKAVN
EECCCCCCCCEEEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHH
NYTDVLPEWGGDGLGKDTEVFGTGRTNGLAQYIYTYQGLTLGAQFTGNNDPQNAGRSEMT
HHHHHCCCCCCCCCCCCCEEEECCCCCCHHEEEEEECCEEEEEEECCCCCCCCCCCCCCC
GPNSTWNSEGSAEGFALSANYDFDMGLSLGAAYNQAGKTDEQADNAAFGGDRDAKLYGVG
CCCCCCCCCCCCCCEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCEEEECC
AKYEAGDLYLAATYSHGEDHLFVNNGYAEKMDGYEAVAQYTFGKFKPSLAYLRTDVKDNA
CCEECCCEEEEEEECCCCCEEEEECCCHHHCCHHHHHHHHHHHCCCCCHHEEEECCCCCC
RGIDDTATEYVSIGAWYNFTDNFNAYVDYKINLLDNVNGTHTNSLGKNTDDVVAVALQYN
CCCCCCCHHEEEECEEEECCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEC
F
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 3017988; 9278503; 8057841; 8648624 [H]