Click here to switch to the map view.

The map label for this gene is arnD

Identifier: 145300199

GI number: 145300199

Start: 3578979

End: 3579878

Strand: Direct

Name: arnD

Synonym: ASA_3310

Alternate gene names: 145300199

Gene position: 3578979-3579878 (Clockwise)

Preceding gene: 145300198

Following gene: 145300200

Centisome position: 76.11

GC content: 65.67

Gene sequence:

>900_bases
ATGATTGATGTGGGTCTGCGGATCGACGTTGATACCTTCAGGGGGACCCGTGACGGGGTTCCCCGCTTGCTGCAAACCCT
CGACCGGCATCAGATCAAGGCCAGCTTCTTCTTCTCCGTGGGCCCCGACAACATGGGGCGCCACCTGTGGCGCCTGCTCA
AGCCCCGCTTCCTGCTCAAGATGCTGCGCTCCAACGCGGCATCCCTCTATGGGCTGGATATTCTGCTGGCCGGCACCGCC
TGGCCCGGCAAGTCCATCGGCAAGCAGCTGGGCTCCCTGATGCGCGATACCGACAGCGCCCGCCACGAGGTGGGCCTGCA
CGCCTGGGATCACCACGGCTGGCAGGCCAATACGGGCCGCTGGGATGAAGCGACGCTTATCCACCAGACAAGGCTGGGGG
TGGATGCCCTCAACCAGATCCTGAGGCGGGAAGTGGATTGCTCCGCCGCCGCCGGCTGGCGGGCAGACCCGCTCACCACC
CAGGCCAAGGAGGCGTTCGGCTTTCGCTACAACAGCGATTGCCGTGGCAGCGGCCTGTTTCGACCCTTGCTGCAGGATGG
CCGACCGGGTACGCCGCAAATCCCGGTCAACCTGCCCACCTTCGACGAGGTGGTCGGCACAGAGGTGACGACGGCGCAGT
TCAACGCCTTCATGCTGGACAGGCTCTGCACGCCGCCACAGGTGGCGCCTCACGTCTACACCATTCACGCCGAGGTGGAA
GGGATCGTCATGGCGGATCAGTTCGATGCGCTGCTGGCCGAGGCTAGCGCTCGCGGCATCCGCTTTGTCCCGCTGGGGAG
TCTGTTACCCCCGGATCCCGCTCAATTGGATGCCGGACGGCTGGTGCGCGGCACCCTGCCGGGGCGAGAGGGATGGCTTG
GCTGCAAGGCCGATGTCTAG

Upstream 100 bases:

>100_bases
CGCCGCCTGCTCGACTGGGAACCGACCATCGAAATGGAAGAGACCATCGGCAAGACCCTGGACTTCTTCCTGCAAGGGGC
GGTCAGCACGGGAGTCGAGC

Downstream 100 bases:

>100_bases
ACCCTTACTCACATCGCGGACGTCATGATGCGCCATTGCGCTCACCACACAATGCTACAGAGGATGTCATGAAGTTGACC
AAGTGGGCCCTGCCCCTGTT

Product: polysaccharide deacetylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 299

Protein sequence:

>299_residues
MIDVGLRIDVDTFRGTRDGVPRLLQTLDRHQIKASFFFSVGPDNMGRHLWRLLKPRFLLKMLRSNAASLYGLDILLAGTA
WPGKSIGKQLGSLMRDTDSARHEVGLHAWDHHGWQANTGRWDEATLIHQTRLGVDALNQILRREVDCSAAAGWRADPLTT
QAKEAFGFRYNSDCRGSGLFRPLLQDGRPGTPQIPVNLPTFDEVVGTEVTTAQFNAFMLDRLCTPPQVAPHVYTIHAEVE
GIVMADQFDALLAEASARGIRFVPLGSLLPPDPAQLDAGRLVRGTLPGREGWLGCKADV

Sequences:

>Translated_299_residues
MIDVGLRIDVDTFRGTRDGVPRLLQTLDRHQIKASFFFSVGPDNMGRHLWRLLKPRFLLKMLRSNAASLYGLDILLAGTA
WPGKSIGKQLGSLMRDTDSARHEVGLHAWDHHGWQANTGRWDEATLIHQTRLGVDALNQILRREVDCSAAAGWRADPLTT
QAKEAFGFRYNSDCRGSGLFRPLLQDGRPGTPQIPVNLPTFDEVVGTEVTTAQFNAFMLDRLCTPPQVAPHVYTIHAEVE
GIVMADQFDALLAEASARGIRFVPLGSLLPPDPAQLDAGRLVRGTLPGREGWLGCKADV
>Mature_299_residues
MIDVGLRIDVDTFRGTRDGVPRLLQTLDRHQIKASFFFSVGPDNMGRHLWRLLKPRFLLKMLRSNAASLYGLDILLAGTA
WPGKSIGKQLGSLMRDTDSARHEVGLHAWDHHGWQANTGRWDEATLIHQTRLGVDALNQILRREVDCSAAAGWRADPLTT
QAKEAFGFRYNSDCRGSGLFRPLLQDGRPGTPQIPVNLPTFDEVVGTEVTTAQFNAFMLDRLCTPPQVAPHVYTIHAEVE
GIVMADQFDALLAEASARGIRFVPLGSLLPPDPAQLDAGRLVRGTLPGREGWLGCKADV

Specific function: Catalyzes the deformylation of 4-deoxy-4-formamido-L- arabinose-phosphoundecaprenol to 4-amino-4-deoxy-L-arabinose- phosphoundecaprenol. The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial p

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide deacetylase family. ArnD deformylase subfamily

Homologues:

Organism=Escherichia coli, GI1788590, Length=296, Percent_Identity=59.7972972972973, Blast_Score=355, Evalue=3e-99,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): ARND_AERS4 (A4SQX0)

Other databases:

- EMBL:   CP000644
- RefSeq:   YP_001143040.1
- ProteinModelPortal:   A4SQX0
- STRING:   A4SQX0
- GeneID:   4998025
- GenomeReviews:   CP000644_GR
- KEGG:   asa:ASA_3310
- eggNOG:   COG0726
- HOGENOM:   HBG298639
- OMA:   CSAVAGW
- PhylomeDB:   A4SQX0
- ProtClustDB:   PRK15394
- BioCyc:   ASAL382245:ASA_3310-MONOMER
- HAMAP:   MF_01870
- InterPro:   IPR011330
- InterPro:   IPR002509
- Gene3D:   G3DSA:3.20.20.370

Pfam domain/function: PF01522 Polysacc_deac_1; SSF88713 Glyco_hydro/deAcase_b/a-brl

EC number: NA

Molecular weight: Translated: 32993; Mature: 32993

Theoretical pI: Translated: 7.65; Mature: 7.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDVGLRIDVDTFRGTRDGVPRLLQTLDRHQIKASFFFSVGPDNMGRHLWRLLKPRFLLK
CEECCEEEEHHHCCCCCCCHHHHHHHHHHHHEEEEEEEEECCCHHHHHHHHHHHHHHHHH
MLRSNAASLYGLDILLAGTAWPGKSIGKQLGSLMRDTDSARHEVGLHAWDHHGWQANTGR
HHHHCCCHHCCEEEEEECCCCCCHHHHHHHHHHHHHCCHHHHHCCCEEECCCCCCCCCCC
WDEATLIHQTRLGVDALNQILRREVDCSAAAGWRADPLTTQAKEAFGFRYNSDCRGSGLF
CCCHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCH
RPLLQDGRPGTPQIPVNLPTFDEVVGTEVTTAQFNAFMLDRLCTPPQVAPHVYTIHAEVE
HHHHHCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEEECCC
GIVMADQFDALLAEASARGIRFVPLGSLLPPDPAQLDAGRLVRGTLPGREGWLGCKADV
EEEEHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC
>Mature Secondary Structure
MIDVGLRIDVDTFRGTRDGVPRLLQTLDRHQIKASFFFSVGPDNMGRHLWRLLKPRFLLK
CEECCEEEEHHHCCCCCCCHHHHHHHHHHHHEEEEEEEEECCCHHHHHHHHHHHHHHHHH
MLRSNAASLYGLDILLAGTAWPGKSIGKQLGSLMRDTDSARHEVGLHAWDHHGWQANTGR
HHHHCCCHHCCEEEEEECCCCCCHHHHHHHHHHHHHCCHHHHHCCCEEECCCCCCCCCCC
WDEATLIHQTRLGVDALNQILRREVDCSAAAGWRADPLTTQAKEAFGFRYNSDCRGSGLF
CCCHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCH
RPLLQDGRPGTPQIPVNLPTFDEVVGTEVTTAQFNAFMLDRLCTPPQVAPHVYTIHAEVE
HHHHHCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEEECCC
GIVMADQFDALLAEASARGIRFVPLGSLLPPDPAQLDAGRLVRGTLPGREGWLGCKADV
EEEEHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA