| Definition | Aeromonas salmonicida subsp. salmonicida A449, complete genome. |
|---|---|
| Accession | NC_009348 |
| Length | 4,702,402 |
Click here to switch to the map view.
The map label for this gene is ynjD [H]
Identifier: 145299735
GI number: 145299735
Start: 3015298
End: 3015960
Strand: Direct
Name: ynjD [H]
Synonym: ASA_2812
Alternate gene names: 145299735
Gene position: 3015298-3015960 (Clockwise)
Preceding gene: 145299734
Following gene: 145299736
Centisome position: 64.12
GC content: 64.25
Gene sequence:
>663_bases ATGCTAAACACAACCCCACTTCATCTCTACCTCGATGAGAACCTGCTGCTGTCGCTGCCTGCGCTACAGATTGCCCCCGG TGAGGTGCTGACCCTGATGGGCCCCAGTGGCTGTGGAAAGAGCTCGCTGCTGGGGGCGCTGGCGGGCGTCTTGCCGCCCA GGGGGCCGATCCGGCTGGAAGGGGATATACGGCAGGGTGAACGGCTGCTCACCTCACTGCCTCCCCAGACCCGGCGTATC GGCATGCTGTTTCAGGATGACCTCTTGTTTGCCCATCTGACGGTGGCTGAAAACCTGATGTTCGGCATGCCTGCCACCCT CAAGGGCGCGGCGGCCAGACGGGCAAAGACGTTGGACACGCTGGCAGAAGTAGCGCTGGTCGATCAGGCCGACAAGCTGC CGGGAGCACTCTCCGGCGGCCAGAGGGCGCGGGTCAGTCTGCTGCGGGCTTTGCTGGCAGAGCCCCGGGCCCTGTTGCTG GACGAGCCCTTCTCCCGCCTCGACAAGCCGCTGCGCGCCGCCTTCAGAACTCTGGTGTTCGAGCGACTCACAGCATTGGG CATCCCTGCCATTCTGGTGACCCATGACGAGGAAGATGCCCCCGGCGCTATTCTTCACCTCACGCCACCCCGCACCTCAC CTCACCTCACCCCACTATGCTGA
Upstream 100 bases:
>100_bases CAACTGCTGCTGCCCCTTGTCATCTATCTGCTGGCACTCTGGCTGCCAGCCCGGCTCAACCCTGCGCTAAAGGACGCCCG ATGAACACGAGAAGCTGCCG
Downstream 100 bases:
>100_bases TTGATCGCGAAGGAGACTCATCTTGTTTGACCGCCATCTGATCCCCCTTATTCGCAGCCCCCTCACCCGGCTGGCCAAAC CCCTCTGCCGAGCCGGGATC
Product: ABC-type transporter, ATPase subunit
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 220; Mature: 220
Protein sequence:
>220_residues MLNTTPLHLYLDENLLLSLPALQIAPGEVLTLMGPSGCGKSSLLGALAGVLPPRGPIRLEGDIRQGERLLTSLPPQTRRI GMLFQDDLLFAHLTVAENLMFGMPATLKGAAARRAKTLDTLAEVALVDQADKLPGALSGGQRARVSLLRALLAEPRALLL DEPFSRLDKPLRAAFRTLVFERLTALGIPAILVTHDEEDAPGAILHLTPPRTSPHLTPLC
Sequences:
>Translated_220_residues MLNTTPLHLYLDENLLLSLPALQIAPGEVLTLMGPSGCGKSSLLGALAGVLPPRGPIRLEGDIRQGERLLTSLPPQTRRI GMLFQDDLLFAHLTVAENLMFGMPATLKGAAARRAKTLDTLAEVALVDQADKLPGALSGGQRARVSLLRALLAEPRALLL DEPFSRLDKPLRAAFRTLVFERLTALGIPAILVTHDEEDAPGAILHLTPPRTSPHLTPLC >Mature_220_residues MLNTTPLHLYLDENLLLSLPALQIAPGEVLTLMGPSGCGKSSLLGALAGVLPPRGPIRLEGDIRQGERLLTSLPPQTRRI GMLFQDDLLFAHLTVAENLMFGMPATLKGAAARRAKTLDTLAEVALVDQADKLPGALSGGQRARVSLLRALLAEPRALLL DEPFSRLDKPLRAAFRTLVFERLTALGIPAILVTHDEEDAPGAILHLTPPRTSPHLTPLC
Specific function: Probably part of a binding-protein-dependent transport system YnjCD. Probably responsible for energy coupling to the transport system [H]
COG id: COG4136
COG function: function code R; ABC-type uncharacterized transport system, ATPase component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI46592898, Length=179, Percent_Identity=32.9608938547486, Blast_Score=79, Evalue=4e-15, Organism=Homo sapiens, GI46592964, Length=179, Percent_Identity=32.9608938547486, Blast_Score=79, Evalue=4e-15, Organism=Homo sapiens, GI46592915, Length=179, Percent_Identity=32.9608938547486, Blast_Score=79, Evalue=4e-15, Organism=Homo sapiens, GI46592978, Length=179, Percent_Identity=32.9608938547486, Blast_Score=78, Evalue=5e-15, Organism=Homo sapiens, GI46592956, Length=179, Percent_Identity=32.9608938547486, Blast_Score=78, Evalue=5e-15, Organism=Homo sapiens, GI46592971, Length=177, Percent_Identity=32.7683615819209, Blast_Score=76, Evalue=2e-14, Organism=Homo sapiens, GI105990541, Length=181, Percent_Identity=29.8342541436464, Blast_Score=74, Evalue=8e-14, Organism=Homo sapiens, GI116734710, Length=188, Percent_Identity=32.4468085106383, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI45446740, Length=193, Percent_Identity=30.0518134715026, Blast_Score=71, Evalue=6e-13, Organism=Homo sapiens, GI47078218, Length=193, Percent_Identity=30.0518134715026, Blast_Score=71, Evalue=6e-13, Organism=Homo sapiens, GI11967971, Length=162, Percent_Identity=35.8024691358025, Blast_Score=71, Evalue=8e-13, Organism=Homo sapiens, GI27881501, Length=185, Percent_Identity=30.2702702702703, Blast_Score=69, Evalue=2e-12, Organism=Homo sapiens, GI42741659, Length=157, Percent_Identity=34.3949044585987, Blast_Score=69, Evalue=3e-12, Organism=Homo sapiens, GI30795238, Length=185, Percent_Identity=30.2702702702703, Blast_Score=69, Evalue=3e-12, Organism=Homo sapiens, GI171184400, Length=160, Percent_Identity=37.5, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI27262624, Length=151, Percent_Identity=34.4370860927152, Blast_Score=68, Evalue=6e-12, Organism=Homo sapiens, GI27262626, Length=151, Percent_Identity=34.4370860927152, Blast_Score=68, Evalue=6e-12, Organism=Homo sapiens, GI9955966, Length=160, Percent_Identity=32.5, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI45243524, Length=160, Percent_Identity=32.5, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI11967969, Length=155, Percent_Identity=32.258064516129, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI9961250, Length=154, Percent_Identity=32.4675324675325, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI4505771, Length=154, Percent_Identity=32.4675324675325, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI9961252, Length=154, Percent_Identity=32.4675324675325, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI62526033, Length=176, Percent_Identity=32.9545454545455, Blast_Score=66, Evalue=2e-11, Organism=Homo sapiens, GI215820660, Length=180, Percent_Identity=30.5555555555556, Blast_Score=65, Evalue=3e-11, Organism=Homo sapiens, GI20143975, Length=180, Percent_Identity=30.5555555555556, Blast_Score=65, Evalue=3e-11, Organism=Homo sapiens, GI9955968, Length=160, Percent_Identity=32.5, Blast_Score=65, Evalue=4e-11, Organism=Escherichia coli, GI1788053, Length=219, Percent_Identity=45.662100456621, Blast_Score=173, Evalue=6e-45, Organism=Escherichia coli, GI1790467, Length=183, Percent_Identity=43.1693989071038, Blast_Score=128, Evalue=2e-31, Organism=Escherichia coli, GI87081791, Length=181, Percent_Identity=41.4364640883978, Blast_Score=125, Evalue=2e-30, Organism=Escherichia coli, GI1786253, Length=181, Percent_Identity=40.8839779005525, Blast_Score=122, Evalue=2e-29, Organism=Escherichia coli, GI1788761, Length=190, Percent_Identity=38.9473684210526, Blast_Score=121, Evalue=5e-29, Organism=Escherichia coli, GI1787370, Length=180, Percent_Identity=39.4444444444444, Blast_Score=117, Evalue=8e-28, Organism=Escherichia coli, GI87081709, Length=188, Percent_Identity=36.7021276595745, Blast_Score=116, Evalue=1e-27, Organism=Escherichia coli, GI1787712, Length=180, Percent_Identity=37.2222222222222, Blast_Score=112, Evalue=2e-26, Organism=Escherichia coli, GI87082267, Length=183, Percent_Identity=36.0655737704918, Blast_Score=110, Evalue=5e-26, Organism=Escherichia coli, GI1787029, Length=182, Percent_Identity=39.5604395604396, Blast_Score=107, Evalue=7e-25, Organism=Escherichia coli, GI1786563, Length=199, Percent_Identity=36.6834170854271, Blast_Score=102, Evalue=1e-23, Organism=Escherichia coli, GI1789032, Length=184, Percent_Identity=36.4130434782609, Blast_Score=98, Evalue=4e-22, Organism=Escherichia coli, GI1786872, Length=165, Percent_Identity=38.7878787878788, Blast_Score=98, Evalue=6e-22, Organism=Escherichia coli, GI1789873, Length=192, Percent_Identity=36.9791666666667, Blast_Score=96, Evalue=2e-21, Organism=Escherichia coli, GI1787089, Length=184, Percent_Identity=38.5869565217391, Blast_Score=93, Evalue=1e-20, Organism=Escherichia coli, GI1787164, Length=200, Percent_Identity=37, Blast_Score=92, Evalue=3e-20, Organism=Escherichia coli, GI1789672, Length=205, Percent_Identity=31.219512195122, Blast_Score=91, Evalue=6e-20, Organism=Escherichia coli, GI1788225, Length=188, Percent_Identity=38.2978723404255, Blast_Score=89, Evalue=2e-19, Organism=Escherichia coli, GI1788450, Length=184, Percent_Identity=34.7826086956522, Blast_Score=82, Evalue=4e-17, Organism=Escherichia coli, GI1786698, Length=195, Percent_Identity=33.3333333333333, Blast_Score=81, Evalue=5e-17, Organism=Escherichia coli, GI1786981, Length=186, Percent_Identity=38.7096774193548, Blast_Score=80, Evalue=9e-17, Organism=Escherichia coli, GI1786703, Length=184, Percent_Identity=33.1521739130435, Blast_Score=78, Evalue=4e-16, Organism=Escherichia coli, GI1788644, Length=208, Percent_Identity=34.6153846153846, Blast_Score=77, Evalue=8e-16, Organism=Escherichia coli, GI1789593, Length=180, Percent_Identity=31.1111111111111, Blast_Score=77, Evalue=8e-16, Organism=Escherichia coli, GI1787758, Length=183, Percent_Identity=33.879781420765, Blast_Score=77, Evalue=8e-16, Organism=Escherichia coli, GI87081834, Length=177, Percent_Identity=30.5084745762712, Blast_Score=77, Evalue=8e-16, Organism=Escherichia coli, GI1786398, Length=187, Percent_Identity=32.620320855615, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1788506, Length=192, Percent_Identity=31.7708333333333, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1789891, Length=190, Percent_Identity=35.2631578947368, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1790544, Length=173, Percent_Identity=32.9479768786127, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI1789962, Length=185, Percent_Identity=29.7297297297297, Blast_Score=75, Evalue=3e-15, Organism=Escherichia coli, GI1789864, Length=193, Percent_Identity=29.0155440414508, Blast_Score=73, Evalue=1e-14, Organism=Escherichia coli, GI1790162, Length=209, Percent_Identity=30.622009569378, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI1787500, Length=187, Percent_Identity=31.0160427807487, Blast_Score=72, Evalue=2e-14, Organism=Escherichia coli, GI1787105, Length=201, Percent_Identity=33.8308457711443, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI48994997, Length=186, Percent_Identity=29.0322580645161, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI1789586, Length=189, Percent_Identity=31.7460317460317, Blast_Score=71, Evalue=7e-14, Organism=Escherichia coli, GI48994883, Length=182, Percent_Identity=31.8681318681319, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1789991, Length=181, Percent_Identity=32.0441988950276, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI145693107, Length=191, Percent_Identity=31.413612565445, Blast_Score=68, Evalue=4e-13, Organism=Escherichia coli, GI1789963, Length=188, Percent_Identity=29.7872340425532, Blast_Score=68, Evalue=5e-13, Organism=Escherichia coli, GI1787792, Length=172, Percent_Identity=30.2325581395349, Blast_Score=67, Evalue=9e-13, Organism=Escherichia coli, GI48994943, Length=190, Percent_Identity=30, Blast_Score=66, Evalue=1e-12, Organism=Escherichia coli, GI1787759, Length=191, Percent_Identity=29.3193717277487, Blast_Score=66, Evalue=1e-12, Organism=Escherichia coli, GI1786975, Length=211, Percent_Identity=27.0142180094787, Blast_Score=65, Evalue=4e-12, Organism=Escherichia coli, GI1787547, Length=188, Percent_Identity=29.2553191489362, Blast_Score=65, Evalue=4e-12, Organism=Escherichia coli, GI1788165, Length=185, Percent_Identity=34.5945945945946, Blast_Score=64, Evalue=6e-12, Organism=Escherichia coli, GI1790190, Length=187, Percent_Identity=28.8770053475936, Blast_Score=64, Evalue=7e-12, Organism=Escherichia coli, GI1788897, Length=190, Percent_Identity=33.1578947368421, Blast_Score=63, Evalue=1e-11, Organism=Escherichia coli, GI1786803, Length=204, Percent_Identity=28.921568627451, Blast_Score=63, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17565586, Length=182, Percent_Identity=35.1648351648352, Blast_Score=82, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17541710, Length=157, Percent_Identity=35.6687898089172, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17558664, Length=170, Percent_Identity=31.1764705882353, Blast_Score=72, Evalue=2e-13, Organism=Caenorhabditis elegans, GI115535101, Length=160, Percent_Identity=32.5, Blast_Score=71, Evalue=5e-13, Organism=Caenorhabditis elegans, GI17567265, Length=187, Percent_Identity=28.8770053475936, Blast_Score=70, Evalue=8e-13, Organism=Caenorhabditis elegans, GI115533608, Length=183, Percent_Identity=30.0546448087432, Blast_Score=70, Evalue=9e-13, Organism=Caenorhabditis elegans, GI193211017, Length=164, Percent_Identity=30.4878048780488, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI193211015, Length=164, Percent_Identity=30.4878048780488, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI71996809, Length=194, Percent_Identity=29.3814432989691, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI115533592, Length=172, Percent_Identity=34.8837209302326, Blast_Score=68, Evalue=4e-12, Organism=Caenorhabditis elegans, GI17565938, Length=158, Percent_Identity=32.9113924050633, Blast_Score=67, Evalue=5e-12, Organism=Caenorhabditis elegans, GI17567269, Length=164, Percent_Identity=31.7073170731707, Blast_Score=67, Evalue=6e-12, Organism=Caenorhabditis elegans, GI17543740, Length=160, Percent_Identity=31.875, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI71984940, Length=173, Percent_Identity=32.3699421965318, Blast_Score=66, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17569143, Length=156, Percent_Identity=35.2564102564103, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI212646699, Length=164, Percent_Identity=29.8780487804878, Blast_Score=65, Evalue=3e-11, Organism=Saccharomyces cerevisiae, GI6319856, Length=183, Percent_Identity=30.6010928961749, Blast_Score=64, Evalue=2e-11, Organism=Drosophila melanogaster, GI281363262, Length=154, Percent_Identity=32.4675324675325, Blast_Score=75, Evalue=5e-14, Organism=Drosophila melanogaster, GI24653245, Length=154, Percent_Identity=32.4675324675325, Blast_Score=74, Evalue=5e-14, Organism=Drosophila melanogaster, GI161076682, Length=181, Percent_Identity=33.1491712707182, Blast_Score=74, Evalue=7e-14, Organism=Drosophila melanogaster, GI161076684, Length=181, Percent_Identity=33.1491712707182, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI24581617, Length=181, Percent_Identity=33.1491712707182, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI24581615, Length=181, Percent_Identity=33.1491712707182, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI24666092, Length=178, Percent_Identity=30.8988764044944, Blast_Score=69, Evalue=2e-12, Organism=Drosophila melanogaster, GI17647959, Length=154, Percent_Identity=34.4155844155844, Blast_Score=68, Evalue=4e-12, Organism=Drosophila melanogaster, GI28574533, Length=176, Percent_Identity=32.9545454545455, Blast_Score=68, Evalue=4e-12, Organism=Drosophila melanogaster, GI24641565, Length=185, Percent_Identity=31.3513513513514, Blast_Score=68, Evalue=6e-12, Organism=Drosophila melanogaster, GI17136592, Length=184, Percent_Identity=34.2391304347826, Blast_Score=68, Evalue=6e-12, Organism=Drosophila melanogaster, GI19920532, Length=151, Percent_Identity=33.7748344370861, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI24580930, Length=151, Percent_Identity=33.7748344370861, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI45550390, Length=189, Percent_Identity=32.2751322751323, Blast_Score=66, Evalue=1e-11, Organism=Drosophila melanogaster, GI24585557, Length=167, Percent_Identity=30.5389221556886, Blast_Score=65, Evalue=4e-11, Organism=Drosophila melanogaster, GI85726357, Length=179, Percent_Identity=32.4022346368715, Blast_Score=65, Evalue=4e-11, Organism=Drosophila melanogaster, GI24648279, Length=156, Percent_Identity=30.7692307692308, Blast_Score=65, Evalue=4e-11, Organism=Drosophila melanogaster, GI45552437, Length=158, Percent_Identity=29.746835443038, Blast_Score=64, Evalue=5e-11, Organism=Drosophila melanogaster, GI24643674, Length=178, Percent_Identity=27.5280898876405, Blast_Score=64, Evalue=6e-11, Organism=Drosophila melanogaster, GI17136662, Length=159, Percent_Identity=31.4465408805031, Blast_Score=64, Evalue=6e-11, Organism=Drosophila melanogaster, GI161078426, Length=156, Percent_Identity=30.7692307692308, Blast_Score=64, Evalue=6e-11, Organism=Drosophila melanogaster, GI24582014, Length=197, Percent_Identity=28.9340101522843, Blast_Score=64, Evalue=7e-11, Organism=Drosophila melanogaster, GI24582012, Length=197, Percent_Identity=28.9340101522843, Blast_Score=64, Evalue=7e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 23599; Mature: 23599
Theoretical pI: Translated: 7.64; Mature: 7.64
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLNTTPLHLYLDENLLLSLPALQIAPGEVLTLMGPSGCGKSSLLGALAGVLPPRGPIRLE CCCCCEEEEEECCCEEEECCCEEECCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEE GDIRQGERLLTSLPPQTRRIGMLFQDDLLFAHLTVAENLMFGMPATLKGAAARRAKTLDT CCHHHHHHHHHHCCCCHHHCCCEECCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH LAEVALVDQADKLPGALSGGQRARVSLLRALLAEPRALLLDEPFSRLDKPLRAAFRTLVF HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCHHEECCCCHHHHHHHHHHHHHHHHH ERLTALGIPAILVTHDEEDAPGAILHLTPPRTSPHLTPLC HHHHHHCCCEEEEECCCCCCCCEEEEECCCCCCCCCCCCC >Mature Secondary Structure MLNTTPLHLYLDENLLLSLPALQIAPGEVLTLMGPSGCGKSSLLGALAGVLPPRGPIRLE CCCCCEEEEEECCCEEEECCCEEECCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEE GDIRQGERLLTSLPPQTRRIGMLFQDDLLFAHLTVAENLMFGMPATLKGAAARRAKTLDT CCHHHHHHHHHHCCCCHHHCCCEECCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH LAEVALVDQADKLPGALSGGQRARVSLLRALLAEPRALLLDEPFSRLDKPLRAAFRTLVF HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCHHEECCCCHHHHHHHHHHHHHHHHH ERLTALGIPAILVTHDEEDAPGAILHLTPPRTSPHLTPLC HHHHHHCCCEEEEECCCCCCCCEEEEECCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9097039; 9278503 [H]