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The map label for this gene is yfeR [C]

Identifier: 145299215

GI number: 145299215

Start: 2387730

End: 2388617

Strand: Direct

Name: yfeR [C]

Synonym: ASA_2257

Alternate gene names: 145299215

Gene position: 2387730-2388617 (Clockwise)

Preceding gene: 145299214

Following gene: 145299218

Centisome position: 50.78

GC content: 64.41

Gene sequence:

>888_bases
ATGTTACTGGAAGGATTGGAGACACTCAGCCTGCTGGCAAGCGAGGGCACCATGGCCAAGGTGGCCAGCCGCCTCTACAT
CAGCCAGTCGGCGGTGAGCAAGCGCATTGGTCAGCTGGAGCTCCGCCTTGGCAAGAAGCTGATCGAGCCGGATGGCCGCC
AGATCCGGCTCACCCCCCAGGCGCGGGAGCTGCTCGACCGGGTGGCACCGAGTCTCGCCGAGATGAAGGGGGTGCTGGCC
GACAGCCAGACCCTCACCGACCTGACTCCCCTGCCGATCGCCTGCTCCGAAACCCTGCTGGCGGGCTACCTCGCCCGCTT
CATGCACGACTATCTGGGCCGCGATCCCCATATTGCCCTCTCCACCCATCACACCCCGGTGATCCTGGCCCGGGTGCGCA
GTGGCGACGCCCTGCTCGGCATCTGTGCCGGTCGGCTGCCTCCCGGCCATGGCCTGGGAGCCGAGCTATTGCTGGAGGAG
CCCTTCTATCTGGTTGGAAGCGATCAGGATGAGGGGATACCGGCAGATCAGCGGCCGTTCGAGCTGGGTCAGGGGCACAG
GCTCAAGATCCTGACCATGGATCTGGATAACCCCTCCAACCGCTACCTGCGCGAACCCCTGACACAATTGGGCATGGTGC
CCGCCATGGAGCTGGACTCCTATCTGGCGCTGATAGAACTCGCCAAGGCAGGCATAGGCCCTGTGCTGCTGCCGGCAGGT
CTGCTGGCACTGGTGGGAGAACAGGGGGAAACGGCGCGCCCCTTGCCTGGGCTGGGGCGCCCTTTGCATCTGGTCTATCG
CCAGAGCAGTCTGAAGCGGGAACGCATTGCGCAGCTGGTGAGTGCGCTGCGCAGGCACTTTCATCATTTCAGCGGGTCGA
GTCAATAA

Upstream 100 bases:

>100_bases
GCGCTGGCGGCCTGCCAAGGCGGTGAACGACACTTGCTCCTGACGCCATCAGCCCCTAAGGTAACGCCATTCGATATACG
GTGAGACACCAGGGGCCCTA

Downstream 100 bases:

>100_bases
ACCCGTGCAAGCAGTAGAGAGCACGTGGTTATAAGCAGATCTGCCGTCTCACTGGATCCAGGCAAACAGCTCGGGATACT
GGCTCCACATCAATTTGGCT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 295; Mature: 295

Protein sequence:

>295_residues
MLLEGLETLSLLASEGTMAKVASRLYISQSAVSKRIGQLELRLGKKLIEPDGRQIRLTPQARELLDRVAPSLAEMKGVLA
DSQTLTDLTPLPIACSETLLAGYLARFMHDYLGRDPHIALSTHHTPVILARVRSGDALLGICAGRLPPGHGLGAELLLEE
PFYLVGSDQDEGIPADQRPFELGQGHRLKILTMDLDNPSNRYLREPLTQLGMVPAMELDSYLALIELAKAGIGPVLLPAG
LLALVGEQGETARPLPGLGRPLHLVYRQSSLKRERIAQLVSALRRHFHHFSGSSQ

Sequences:

>Translated_295_residues
MLLEGLETLSLLASEGTMAKVASRLYISQSAVSKRIGQLELRLGKKLIEPDGRQIRLTPQARELLDRVAPSLAEMKGVLA
DSQTLTDLTPLPIACSETLLAGYLARFMHDYLGRDPHIALSTHHTPVILARVRSGDALLGICAGRLPPGHGLGAELLLEE
PFYLVGSDQDEGIPADQRPFELGQGHRLKILTMDLDNPSNRYLREPLTQLGMVPAMELDSYLALIELAKAGIGPVLLPAG
LLALVGEQGETARPLPGLGRPLHLVYRQSSLKRERIAQLVSALRRHFHHFSGSSQ
>Mature_295_residues
MLLEGLETLSLLASEGTMAKVASRLYISQSAVSKRIGQLELRLGKKLIEPDGRQIRLTPQARELLDRVAPSLAEMKGVLA
DSQTLTDLTPLPIACSETLLAGYLARFMHDYLGRDPHIALSTHHTPVILARVRSGDALLGICAGRLPPGHGLGAELLLEE
PFYLVGSDQDEGIPADQRPFELGQGHRLKILTMDLDNPSNRYLREPLTQLGMVPAMELDSYLALIELAKAGIGPVLLPAG
LLALVGEQGETARPLPGLGRPLHLVYRQSSLKRERIAQLVSALRRHFHHFSGSSQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788748, Length=278, Percent_Identity=28.0575539568345, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32137; Mature: 32137

Theoretical pI: Translated: 7.37; Mature: 7.37

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLEGLETLSLLASEGTMAKVASRLYISQSAVSKRIGQLELRLGKKLIEPDGRQIRLTPQ
CCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHH
ARELLDRVAPSLAEMKGVLADSQTLTDLTPLPIACSETLLAGYLARFMHDYLGRDPHIAL
HHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEE
STHHTPVILARVRSGDALLGICAGRLPPGHGLGAELLLEEPFYLVGSDQDEGIPADQRPF
ECCCCEEEEEEECCCCEEEEEHHCCCCCCCCCCHHHHCCCCEEEEECCCCCCCCCCCCCH
ELGQGHRLKILTMDLDNPSNRYLREPLTQLGMVPAMELDSYLALIELAKAGIGPVLLPAG
HCCCCCEEEEEEEECCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHH
LLALVGEQGETARPLPGLGRPLHLVYRQSSLKRERIAQLVSALRRHFHHFSGSSQ
HHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MLLEGLETLSLLASEGTMAKVASRLYISQSAVSKRIGQLELRLGKKLIEPDGRQIRLTPQ
CCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHH
ARELLDRVAPSLAEMKGVLADSQTLTDLTPLPIACSETLLAGYLARFMHDYLGRDPHIAL
HHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEE
STHHTPVILARVRSGDALLGICAGRLPPGHGLGAELLLEEPFYLVGSDQDEGIPADQRPF
ECCCCEEEEEEECCCCEEEEEHHCCCCCCCCCCHHHHCCCCEEEEECCCCCCCCCCCCCH
ELGQGHRLKILTMDLDNPSNRYLREPLTQLGMVPAMELDSYLALIELAKAGIGPVLLPAG
HCCCCCEEEEEEEECCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHH
LLALVGEQGETARPLPGLGRPLHLVYRQSSLKRERIAQLVSALRRHFHHFSGSSQ
HHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1741267; 10952301 [H]