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The map label for this gene is rnpA

Identifier: 145297092

GI number: 145297092

Start: 3312748

End: 3313149

Strand: Reverse

Name: rnpA

Synonym: cgR_2988

Alternate gene names: 145297092

Gene position: 3313149-3312748 (Counterclockwise)

Preceding gene: 145297093

Following gene: 145297091

Centisome position: 99.97

GC content: 56.72

Gene sequence:

>402_bases
GTGCTTCCAGCGCAACATAAGCTGAACTCTTCCATGCAATTTCGCACGGTGATGAGGAAAGGGCGTCGCGCTGGCAGTAA
AACTGTCGTTGTGCACCTGTGGGATAGTGCCGAATCGTTGGATGGCACCGAAAAACAGGGCGAAGTCGCCTCATTCGGTG
GTCCGCGGTTCGGCCTTGTCGTTTCTAAGGCCGTCGGAAATGCGGTGGTTCGTCACCGCACCTCCCGACGGCTTCGTCAT
ATCTGTGCAAGCATTGTAGAAAAATCACCAGAGCTACTCTCCCCCACTCATCACGTGGTGATCCGCGCGTTGGCGGGGGC
TGGGAATGCACCCTCGGCGGAACTTGAAAGAGACATCCGCTACGGGTTGGGGAAAACTAGCCGTGTGCGCACCAACAAGT
GA

Upstream 100 bases:

>100_bases
TGCAGGTCGTGCAATTGTTGCGGCTCGTCGTCGCAAGGGTCGCGCAAAGCTGACCGCGTAATTTTTTAGCGTCACCACAA
TAAATAAGGTGTAAGCAACA

Downstream 100 bases:

>100_bases
TGATCCTTTCGACATCCCAGAACCGAAAAGTATCCCGGCGAAGATGGCAGCTTCTGCTGTTCGCTTCTACCAAAAGTATC
TTTCGGGTCTTAAGATGGGT

Product: ribonuclease P

Products: NA

Alternate protein names: RNase P protein; RNaseP protein; Protein C5

Number of amino acids: Translated: 133; Mature: 133

Protein sequence:

>133_residues
MLPAQHKLNSSMQFRTVMRKGRRAGSKTVVVHLWDSAESLDGTEKQGEVASFGGPRFGLVVSKAVGNAVVRHRTSRRLRH
ICASIVEKSPELLSPTHHVVIRALAGAGNAPSAELERDIRYGLGKTSRVRTNK

Sequences:

>Translated_133_residues
MLPAQHKLNSSMQFRTVMRKGRRAGSKTVVVHLWDSAESLDGTEKQGEVASFGGPRFGLVVSKAVGNAVVRHRTSRRLRH
ICASIVEKSPELLSPTHHVVIRALAGAGNAPSAELERDIRYGLGKTSRVRTNK
>Mature_133_residues
MLPAQHKLNSSMQFRTVMRKGRRAGSKTVVVHLWDSAESLDGTEKQGEVASFGGPRFGLVVSKAVGNAVVRHRTSRRLRH
ICASIVEKSPELLSPTHHVVIRALAGAGNAPSAELERDIRYGLGKTSRVRTNK

Specific function: RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-lead

COG id: COG0594

COG function: function code J; RNase P protein component

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rnpA family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RNPA_CORGB (A4QIE5)

Other databases:

- EMBL:   AP009044
- RefSeq:   YP_001139913.1
- ProteinModelPortal:   A4QIE5
- SMR:   A4QIE5
- STRING:   A4QIE5
- GeneID:   4991720
- GenomeReviews:   AP009044_GR
- KEGG:   cgt:cgR_2988
- eggNOG:   COG0594
- HOGENOM:   HBG728160
- OMA:   LWDSAES
- ProtClustDB:   PRK03459
- HAMAP:   MF_00227
- InterPro:   IPR020568
- InterPro:   IPR014721
- InterPro:   IPR000100
- Gene3D:   G3DSA:3.30.230.10
- ProDom:   PD003629
- TIGRFAMs:   TIGR00188

Pfam domain/function: PF00825 Ribonuclease_P; SSF54211 Ribosomal_S5_D2-typ_fold

EC number: =3.1.26.5

Molecular weight: Translated: 14535; Mature: 14535

Theoretical pI: Translated: 11.84; Mature: 11.84

Prosite motif: PS00648 RIBONUCLEASE_P

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLPAQHKLNSSMQFRTVMRKGRRAGSKTVVVHLWDSAESLDGTEKQGEVASFGGPRFGLV
CCCCCCHHCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHH
VSKAVGNAVVRHRTSRRLRHICASIVEKSPELLSPTHHVVIRALAGAGNAPSAELERDIR
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCHHHHHHHHHHHCCCCCCHHHHHHHHH
YGLGKTSRVRTNK
HCCCCCCCCCCCC
>Mature Secondary Structure
MLPAQHKLNSSMQFRTVMRKGRRAGSKTVVVHLWDSAESLDGTEKQGEVASFGGPRFGLV
CCCCCCHHCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHH
VSKAVGNAVVRHRTSRRLRHICASIVEKSPELLSPTHHVVIRALAGAGNAPSAELERDIR
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCHHHHHHHHHHHCCCCCCHHHHHHHHH
YGLGKTSRVRTNK
HCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA