Click here to switch to the map view.

The map label for this gene is yagI [H]

Identifier: 145297012

GI number: 145297012

Start: 3229917

End: 3230699

Strand: Reverse

Name: yagI [H]

Synonym: cgR_2911

Alternate gene names: 145297012

Gene position: 3230699-3229917 (Counterclockwise)

Preceding gene: 145297015

Following gene: 145297011

Centisome position: 97.48

GC content: 53.9

Gene sequence:

>783_bases
GTGATTATGGATAACGTCGCCCCCACCCAGGGGTTACCCCCGAAAGAATTTCTAAGCTCTGTCGACATTGCATTGCAGCT
CATTTTGCTGCTCCGTGACTCTGGAAGTTTGACCATTTCCGGTGCCGCCGAAACCCTTGGGGTGGGCGCGTCTACGATCC
ATCGATCCATGTCAATGCTGGTCTACCGGGGTTTTGCAGTCAGAAGCGAGTCCCGCACCTACCTTCCAGGCTCCGCATTG
GCGACCTCCGCGCTGCAGCCGGGCCTTGGCGCTGACTTGACGAAAAAATGCAGCCACTACATGGAATCAATCGGCAAGGA
AACTGGCGAAACTACCCACTTGGTGATTCTGCAGGGAGATAGCGTTCACTTTATTCACAGTGTTGAAGGTTCCCTGCCGG
TGCGCGTGGGCAATCGTCGAGGTCAAGTCATGCCCGCCATCCAAAATTCAGGTGGATTAGTGATGCTTGCAGAGATGTCA
GCCCGGGAGCTTCGGGCACTGTATTCCAGCCTGGGCGATGAGGAATTTGAGAATTTAAGAAAGCGTCTTCGCAGGACCCG
GGATCGAGGCCATGGCGCAAACTTTGGCTTCTTTGAGCAGGACGTTAGTGCAGTTGCGGAGCCTTTACTTAACGATGTGG
GTGATGTTTTAGGTGCAATTACAGTGGCTGTGCCGTCGAATCGGTTCCGGGAGGTCTATCCGAAGGCGGTGCAGGTTTTG
GAACGACATATGCGGGATCTGAACAAGGCTTTAGCTGATTACCGAGTACCCGAAAAAGGGTGA

Upstream 100 bases:

>100_bases
CTCTGTCATAAGTCCTCCCGATTCTGGTGCGTGTGATGTCATAAACACATAATCGAGGTGAGACAAGTTACAATCAAAGG
TATTCCGCTATCTGGAAAGA

Downstream 100 bases:

>100_bases
ATGGGGGGAATTTTCAGAGCTGTCACACCCCCGTTTCCTGAGGGGAATACTTAGATTCCACATAGCGGAATTATCTTGAG
TCACCTTTCAAAGCCCAATA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 260; Mature: 260

Protein sequence:

>260_residues
MIMDNVAPTQGLPPKEFLSSVDIALQLILLLRDSGSLTISGAAETLGVGASTIHRSMSMLVYRGFAVRSESRTYLPGSAL
ATSALQPGLGADLTKKCSHYMESIGKETGETTHLVILQGDSVHFIHSVEGSLPVRVGNRRGQVMPAIQNSGGLVMLAEMS
ARELRALYSSLGDEEFENLRKRLRRTRDRGHGANFGFFEQDVSAVAEPLLNDVGDVLGAITVAVPSNRFREVYPKAVQVL
ERHMRDLNKALADYRVPEKG

Sequences:

>Translated_260_residues
MIMDNVAPTQGLPPKEFLSSVDIALQLILLLRDSGSLTISGAAETLGVGASTIHRSMSMLVYRGFAVRSESRTYLPGSAL
ATSALQPGLGADLTKKCSHYMESIGKETGETTHLVILQGDSVHFIHSVEGSLPVRVGNRRGQVMPAIQNSGGLVMLAEMS
ARELRALYSSLGDEEFENLRKRLRRTRDRGHGANFGFFEQDVSAVAEPLLNDVGDVLGAITVAVPSNRFREVYPKAVQVL
ERHMRDLNKALADYRVPEKG
>Mature_260_residues
MIMDNVAPTQGLPPKEFLSSVDIALQLILLLRDSGSLTISGAAETLGVGASTIHRSMSMLVYRGFAVRSESRTYLPGSAL
ATSALQPGLGADLTKKCSHYMESIGKETGETTHLVILQGDSVHFIHSVEGSLPVRVGNRRGQVMPAIQNSGGLVMLAEMS
ARELRALYSSLGDEEFENLRKRLRRTRDRGHGANFGFFEQDVSAVAEPLLNDVGDVLGAITVAVPSNRFREVYPKAVQVL
ERHMRDLNKALADYRVPEKG

Specific function: Unknown

COG id: COG1414

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 iclR-ED (iclR effector binding) domain [H]

Homologues:

Organism=Escherichia coli, GI1786468, Length=246, Percent_Identity=26.8292682926829, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1788131, Length=229, Percent_Identity=24.0174672489083, Blast_Score=61, Evalue=9e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014757
- InterPro:   IPR005471
- InterPro:   IPR011991 [H]

Pfam domain/function: PF09339 HTH_IclR; PF01614 IclR [H]

EC number: NA

Molecular weight: Translated: 28276; Mature: 28276

Theoretical pI: Translated: 7.80; Mature: 7.80

Prosite motif: PS51078 ICLR_ED

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIMDNVAPTQGLPPKEFLSSVDIALQLILLLRDSGSLTISGAAETLGVGASTIHRSMSML
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHCCCHHHHHHHHHHH
VYRGFAVRSESRTYLPGSALATSALQPGLGADLTKKCSHYMESIGKETGETTHLVILQGD
HHHHHHEECCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECC
SVHFIHSVEGSLPVRVGNRRGQVMPAIQNSGGLVMLAEMSARELRALYSSLGDEEFENLR
CEEEEEECCCCCCEEECCCCCCEEEEEECCCCEEEEEHHHHHHHHHHHHHCCHHHHHHHH
KRLRRTRDRGHGANFGFFEQDVSAVAEPLLNDVGDVLGAITVAVPSNRFREVYPKAVQVL
HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
ERHMRDLNKALADYRVPEKG
HHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MIMDNVAPTQGLPPKEFLSSVDIALQLILLLRDSGSLTISGAAETLGVGASTIHRSMSML
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHCCCHHHHHHHHHHH
VYRGFAVRSESRTYLPGSALATSALQPGLGADLTKKCSHYMESIGKETGETTHLVILQGD
HHHHHHEECCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECC
SVHFIHSVEGSLPVRVGNRRGQVMPAIQNSGGLVMLAEMSARELRALYSSLGDEEFENLR
CEEEEEECCCCCCEEECCCCCCEEEEEECCCCEEEEEHHHHHHHHHHHHHCCHHHHHHHH
KRLRRTRDRGHGANFGFFEQDVSAVAEPLLNDVGDVLGAITVAVPSNRFREVYPKAVQVL
HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
ERHMRDLNKALADYRVPEKG
HHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]