| Definition | Corynebacterium glutamicum R chromosome, complete genome. |
|---|---|
| Accession | NC_009342 |
| Length | 3,314,179 |
Click here to switch to the map view.
The map label for this gene is gsiC [H]
Identifier: 145296650
GI number: 145296650
Start: 2824817
End: 2825782
Strand: Direct
Name: gsiC [H]
Synonym: cgR_2557
Alternate gene names: 145296650
Gene position: 2824817-2825782 (Clockwise)
Preceding gene: 145296649
Following gene: 145296651
Centisome position: 85.23
GC content: 54.76
Gene sequence:
>966_bases ATGTCCAATCTTTTGAGACTTGTCGGCCGACGGCTCATCGCTTTACCGATCATGATTATTGGCGTCACCCTGCTGGTTTT CATCGTCATGTCATTCTCTCCTGCCGACCCGGCACGACTTGCCCTAGGCGAATCAGCCTCCCCCGAAGCACTTGAAGCCT ACCGCGAAGCGAACGGCCTCAACGATCCAATGATGGTTCGCTATTTCGACTTCATCCTCGGCATGCTCAAAGGCGACTTG GGAACCTCTAGCGGTGGCGTAGCTGTTACCGACATTGTTGCCCGCGCTTTCCCCATCACCCTGCAGCTAACATTCTGGGG ACTCATCATCGCTGTTGTAGTGGCGTTGATCCTCGGTGTCATCGCCGCTCTATACCGCGACCGCTGGCCTGACCAGTTGA TTCGCGTGGTCTCCATTGCGGCTCTTGCTACTCCTTCATTCTGGTTGGCTATCTTGCTGATCCAGTGGTTGGGTACTATC CCTGGAGCCTGGGGTTTCTTCCCAGCACTTGTCACCCGGTGGGTCCCATTCAGCGAAGATCCCGCCACCTACTTCAACAA CATCGCACTTCCAGCGATTGCGCTGGCAGTCCCCGTTGCAGGTTCTTTGGCCCGCGTTGTTCGTACCTCCATGGTGGAAG AATTAGACAAGGACTACGTCCGCACAGCAATCGGTGCAGGTATCCCCAAAACTGAAGTTGTTGCCCGCAATGTTCTGCGC AATGCGCTGATCACCCCAATCACCGTGATTGGTCTTCGCGTTGGTTACCTCATGGGTGGTGCGGTGATCATTGAGATCAT CTTCAACATCCAAGCAATGGGACAGCTCATCCTAGACGGTGTGACCCGAAATGACGTCTACCTCGTCCAAGGTGTCACCC TCACCGTTGCCATCGCCTTCATCATCGTCAATATCGCCGTGGACCTGCTCTACGTCCTGGTCAATCCACGTATTAGGAGC ATCTAG
Upstream 100 bases:
>100_bases CTCTCCAATTCTTTCCAGTTTCTGGTGTTTTTCTAGCCTGTTAGTTTTCAGCATTTTTCAGCACACTTTTTAAGATCTCA TCGAAAGCGCGATACCCACT
Downstream 100 bases:
>100_bases ATGCGCCGTAAACTAACCACCACATTAGAAAACAAGCCCGGTGCACGACTTGGTGGCTTCCGCGCACTTGCACCAACTTC AAAAATCGCGCTGGTTTTCC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 321; Mature: 320
Protein sequence:
>321_residues MSNLLRLVGRRLIALPIMIIGVTLLVFIVMSFSPADPARLALGESASPEALEAYREANGLNDPMMVRYFDFILGMLKGDL GTSSGGVAVTDIVARAFPITLQLTFWGLIIAVVVALILGVIAALYRDRWPDQLIRVVSIAALATPSFWLAILLIQWLGTI PGAWGFFPALVTRWVPFSEDPATYFNNIALPAIALAVPVAGSLARVVRTSMVEELDKDYVRTAIGAGIPKTEVVARNVLR NALITPITVIGLRVGYLMGGAVIIEIIFNIQAMGQLILDGVTRNDVYLVQGVTLTVAIAFIIVNIAVDLLYVLVNPRIRS I
Sequences:
>Translated_321_residues MSNLLRLVGRRLIALPIMIIGVTLLVFIVMSFSPADPARLALGESASPEALEAYREANGLNDPMMVRYFDFILGMLKGDL GTSSGGVAVTDIVARAFPITLQLTFWGLIIAVVVALILGVIAALYRDRWPDQLIRVVSIAALATPSFWLAILLIQWLGTI PGAWGFFPALVTRWVPFSEDPATYFNNIALPAIALAVPVAGSLARVVRTSMVEELDKDYVRTAIGAGIPKTEVVARNVLR NALITPITVIGLRVGYLMGGAVIIEIIFNIQAMGQLILDGVTRNDVYLVQGVTLTVAIAFIIVNIAVDLLYVLVNPRIRS I >Mature_320_residues SNLLRLVGRRLIALPIMIIGVTLLVFIVMSFSPADPARLALGESASPEALEAYREANGLNDPMMVRYFDFILGMLKGDLG TSSGGVAVTDIVARAFPITLQLTFWGLIIAVVVALILGVIAALYRDRWPDQLIRVVSIAALATPSFWLAILLIQWLGTIP GAWGFFPALVTRWVPFSEDPATYFNNIALPAIALAVPVAGSLARVVRTSMVEELDKDYVRTAIGAGIPKTEVVARNVLRN ALITPITVIGLRVGYLMGGAVIIEIIFNIQAMGQLILDGVTRNDVYLVQGVTLTVAIAFIIVNIAVDLLYVLVNPRIRSI
Specific function: Part of the ABC transporter complex gsiABCD involved in glutathione import. Probably responsible for the translocation of the substrate across the membrane [H]
COG id: COG0601
COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transmembrane type-1 domain [H]
Homologues:
Organism=Escherichia coli, GI1787053, Length=317, Percent_Identity=35.0157728706625, Blast_Score=193, Evalue=1e-50, Organism=Escherichia coli, GI1789965, Length=340, Percent_Identity=33.8235294117647, Blast_Score=160, Evalue=1e-40, Organism=Escherichia coli, GI1787761, Length=326, Percent_Identity=35.5828220858896, Blast_Score=159, Evalue=3e-40, Organism=Escherichia coli, GI1787497, Length=320, Percent_Identity=30.3125, Blast_Score=145, Evalue=3e-36, Organism=Escherichia coli, GI1789888, Length=328, Percent_Identity=30.4878048780488, Blast_Score=143, Evalue=1e-35, Organism=Escherichia coli, GI1787550, Length=265, Percent_Identity=27.9245283018868, Blast_Score=107, Evalue=1e-24, Organism=Escherichia coli, GI1788504, Length=291, Percent_Identity=26.1168384879725, Blast_Score=100, Evalue=2e-22,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000515 [H]
Pfam domain/function: PF00528 BPD_transp_1 [H]
EC number: NA
Molecular weight: Translated: 34721; Mature: 34590
Theoretical pI: Translated: 8.78; Mature: 8.78
Prosite motif: PS50928 ABC_TM1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSNLLRLVGRRLIALPIMIIGVTLLVFIVMSFSPADPARLALGESASPEALEAYREANGL CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCHHHHHHHHHHCCC NDPMMVRYFDFILGMLKGDLGTSSGGVAVTDIVARAFPITLQLTFWGLIIAVVVALILGV CCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IAALYRDRWPDQLIRVVSIAALATPSFWLAILLIQWLGTIPGAWGFFPALVTRWVPFSED HHHHHHCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCC PATYFNNIALPAIALAVPVAGSLARVVRTSMVEELDKDYVRTAIGAGIPKTEVVARNVLR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH NALITPITVIGLRVGYLMGGAVIIEIIFNIQAMGQLILDGVTRNDVYLVQGVTLTVAIAF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHH IIVNIAVDLLYVLVNPRIRSI HHHHHHHHHHHHHHCCHHCCC >Mature Secondary Structure SNLLRLVGRRLIALPIMIIGVTLLVFIVMSFSPADPARLALGESASPEALEAYREANGL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCHHHHHHHHHHCCC NDPMMVRYFDFILGMLKGDLGTSSGGVAVTDIVARAFPITLQLTFWGLIIAVVVALILGV CCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IAALYRDRWPDQLIRVVSIAALATPSFWLAILLIQWLGTIPGAWGFFPALVTRWVPFSED HHHHHHCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCC PATYFNNIALPAIALAVPVAGSLARVVRTSMVEELDKDYVRTAIGAGIPKTEVVARNVLR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH NALITPITVIGLRVGYLMGGAVIIEIIFNIQAMGQLILDGVTRNDVYLVQGVTLTVAIAF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHH IIVNIAVDLLYVLVNPRIRSI HHHHHHHHHHHHHHCCHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]