| Definition | Corynebacterium glutamicum R chromosome, complete genome. |
|---|---|
| Accession | NC_009342 |
| Length | 3,314,179 |
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The map label for this gene is scrA [H]
Identifier: 145296639
GI number: 145296639
Start: 2812261
End: 2814246
Strand: Reverse
Name: scrA [H]
Synonym: cgR_2547
Alternate gene names: 145296639
Gene position: 2814246-2812261 (Counterclockwise)
Preceding gene: 145296640
Following gene: 145296638
Centisome position: 84.92
GC content: 53.68
Gene sequence:
>1986_bases ATGGACCATAAGGACCTCGCGCAACGCATCCTGCGCGACATTGGCGGCGAAGACAACATTGTCGCCGCCGCACACTGTGC AACGCGTTTACGCCTCGTGCTCAAAGACACCAAGGATGTGGATCGCCAAAGTCTGGATGATGATCCAGATCTGAAAGGCA CGTTTGAAACTGGCGGCATGTTCCAGATCATCGTCGGGCCAGGCGATGTGGATCATGTTTTCAAAGAACTCGATGACGCA ACCTCCAAAGACATCGCTGTGTCCACAGAGCAGCTCAAAGATGTTGTGGCTAACAACGCCAACTGGTTCAGCCGTGCTGT GAAGGTCTTGGCGGACATTTTCGTCCCGCTGATTCCAATCTTGGTTGGTGGCGGTCTGCTCATGGCTATCAACAATGTGT TGGTTGCGCAGGATCTGTTCGGTCCGCAATCACTGGTGGAGATGTTCCCTCAGATCAGCGGTGTTGCTGAGATGATCAAC CTCATGGCATCTGCGCCGTTCGCGTTCTTGCCAGTGTTGGTTGGTTTCACCGCAACCAAGCGTTTCGGTGGCAATGAGTT CCTGGGCGCCGGCATTGGTATGGCGATGGTGTTCCCAACCCTGGTTAACGGCTACGACGTGGCCGCCACCATGGCCGCGG GCGAAATGCCAATGTGGTCCCTGTTTGGTTTGGATGTTGCTCAAGCTGGTTACCAGGGCACCGTGCTTCCTGTGCTGGTG GTCTCTTGGATTCTGGCAACGATCGAGAAGTTTCTGCACAAGCGACTCAAGGGCACTGCAGACTTCCTGATCACCCCAGT GTTGACTCTGCTGCTCACCGGCTTCCTTACGTTCATTGCTATTGGTCCAGCAATGCGCTGGGTGGGTGACTTGCTGGCAC ACGGTCTGCAGGGACTCTATGATTTCGGTGGTCCAGTCGGCGGTCTGCTTTTCGGTCTGGTCTACTCACCAATCGTGATC ACTGGTTTGCATCAGTCCTTCCCGCCAATTGAGCTGGAGCTGTTCAACCAGGGTGGATCCTTCATCTTCGCAACGGCATC CATGGCTAATATCGCCCAGGGTGCGGCATGTTTGGCGGTGTTCTTCCTGGCGAAGAGTGAAAAGCTCAAAGGCCTTGCGG GCGCTTCAGGTGTCTCCGCTGTTCTTGGTATTACAGAGCCTGCGATCTTCGGTGTGAACCTTCGCCTGCGCTGGCCGTTC TACATTGGTATCGGTACCGCAGCTATTGGTGGCGCTTTGATTGCACTCTTTGATATCAAGGCAGTTGCGTTGGGCGCTGC AGGTTTCTTGGGTGTTGTTTCTATTGATGCTCCAGATATGGTCATGTTCTTGGTGTGTGCAGTTGTTACCTTCTTCATCG CATTCGGCGCAGCGATTGCTTATGGCCTTTACTTGGTTCGCCGCAACGGCAGCATTGATCCAGATGCAACCGCTGCTCCA GTGACTGCAGGAACGACCAAAGCCGAAGCAGAAGCACCCGCAGAATTTTCAAACGATTCCACCATCATCCAGGCACCTTT GACCGGTGAAGCTATTGCACTGAGCAGCGTCAGCGATGCCATGTTTGCCAGCGGAAAGCTTGGCTCGGGCGTTGCCATCG TCCCAACCAAGGGGCAGTTAGTTTCTCCGGTGAGTGGAAAGATTGTGGTGGCATTCCCATCTGGCCATGCTTTCGCAGTT CGCACCAAGGCTGAGGATGGTTCCAATGTGGATATCTTGATGCACATTGGTTTCGACACAGTAAACCTCAACGGCACGCA CTTTAACCCGCTGAAGAAGCAGGGCGATGAAGTCAAAGCAGGGGAGCTGCTGTGTGAATTCGATATCGATGCCATTAAGG CTGCAGGTTATGAGGTAACCACGCCGATTGTTGTCTCCAATTACAAGAAAACCGGACCTGTAAACACTTACGGTTTGGGC GAAATTGAAGCAGGAGCCAACCTGCTCAACGTCGCAAAGAAAGAAGCGGTGCCAGCAACACCATAA
Upstream 100 bases:
>100_bases CCCTTGATCGGACACAAATAAACAGGTTTAATGTTGTTTAGCTTTTGAACAAACATTCATGTCTGAATATTTTTGTTTCT TCCCGGTTAAGGAGAAATTC
Downstream 100 bases:
>100_bases GTTGAAACCTTGAGTGTTCGCACACAGGTTAGACTAGGGGACGTGACTCTACGCATCTTTGACACCGGTACCCGTACGCT TCGAGATTTTAAACCTGTTC
Product: hypothetical protein
Products: NA
Alternate protein names: EIIBCA-Scr; EII-Scr; Sucrose-specific phosphotransferase enzyme IIB component; PTS system sucrose-specific EIIB component; Sucrose permease IIC component; PTS system sucrose-specific EIIC component; Sucrose-specific phosphotransferase enzyme IIA component; PTS system sucrose-specific EIIA component [H]
Number of amino acids: Translated: 661; Mature: 661
Protein sequence:
>661_residues MDHKDLAQRILRDIGGEDNIVAAAHCATRLRLVLKDTKDVDRQSLDDDPDLKGTFETGGMFQIIVGPGDVDHVFKELDDA TSKDIAVSTEQLKDVVANNANWFSRAVKVLADIFVPLIPILVGGGLLMAINNVLVAQDLFGPQSLVEMFPQISGVAEMIN LMASAPFAFLPVLVGFTATKRFGGNEFLGAGIGMAMVFPTLVNGYDVAATMAAGEMPMWSLFGLDVAQAGYQGTVLPVLV VSWILATIEKFLHKRLKGTADFLITPVLTLLLTGFLTFIAIGPAMRWVGDLLAHGLQGLYDFGGPVGGLLFGLVYSPIVI TGLHQSFPPIELELFNQGGSFIFATASMANIAQGAACLAVFFLAKSEKLKGLAGASGVSAVLGITEPAIFGVNLRLRWPF YIGIGTAAIGGALIALFDIKAVALGAAGFLGVVSIDAPDMVMFLVCAVVTFFIAFGAAIAYGLYLVRRNGSIDPDATAAP VTAGTTKAEAEAPAEFSNDSTIIQAPLTGEAIALSSVSDAMFASGKLGSGVAIVPTKGQLVSPVSGKIVVAFPSGHAFAV RTKAEDGSNVDILMHIGFDTVNLNGTHFNPLKKQGDEVKAGELLCEFDIDAIKAAGYEVTTPIVVSNYKKTGPVNTYGLG EIEAGANLLNVAKKEAVPATP
Sequences:
>Translated_661_residues MDHKDLAQRILRDIGGEDNIVAAAHCATRLRLVLKDTKDVDRQSLDDDPDLKGTFETGGMFQIIVGPGDVDHVFKELDDA TSKDIAVSTEQLKDVVANNANWFSRAVKVLADIFVPLIPILVGGGLLMAINNVLVAQDLFGPQSLVEMFPQISGVAEMIN LMASAPFAFLPVLVGFTATKRFGGNEFLGAGIGMAMVFPTLVNGYDVAATMAAGEMPMWSLFGLDVAQAGYQGTVLPVLV VSWILATIEKFLHKRLKGTADFLITPVLTLLLTGFLTFIAIGPAMRWVGDLLAHGLQGLYDFGGPVGGLLFGLVYSPIVI TGLHQSFPPIELELFNQGGSFIFATASMANIAQGAACLAVFFLAKSEKLKGLAGASGVSAVLGITEPAIFGVNLRLRWPF YIGIGTAAIGGALIALFDIKAVALGAAGFLGVVSIDAPDMVMFLVCAVVTFFIAFGAAIAYGLYLVRRNGSIDPDATAAP VTAGTTKAEAEAPAEFSNDSTIIQAPLTGEAIALSSVSDAMFASGKLGSGVAIVPTKGQLVSPVSGKIVVAFPSGHAFAV RTKAEDGSNVDILMHIGFDTVNLNGTHFNPLKKQGDEVKAGELLCEFDIDAIKAAGYEVTTPIVVSNYKKTGPVNTYGLG EIEAGANLLNVAKKEAVPATP >Mature_661_residues MDHKDLAQRILRDIGGEDNIVAAAHCATRLRLVLKDTKDVDRQSLDDDPDLKGTFETGGMFQIIVGPGDVDHVFKELDDA TSKDIAVSTEQLKDVVANNANWFSRAVKVLADIFVPLIPILVGGGLLMAINNVLVAQDLFGPQSLVEMFPQISGVAEMIN LMASAPFAFLPVLVGFTATKRFGGNEFLGAGIGMAMVFPTLVNGYDVAATMAAGEMPMWSLFGLDVAQAGYQGTVLPVLV VSWILATIEKFLHKRLKGTADFLITPVLTLLLTGFLTFIAIGPAMRWVGDLLAHGLQGLYDFGGPVGGLLFGLVYSPIVI TGLHQSFPPIELELFNQGGSFIFATASMANIAQGAACLAVFFLAKSEKLKGLAGASGVSAVLGITEPAIFGVNLRLRWPF YIGIGTAAIGGALIALFDIKAVALGAAGFLGVVSIDAPDMVMFLVCAVVTFFIAFGAAIAYGLYLVRRNGSIDPDATAAP VTAGTTKAEAEAPAEFSNDSTIIQAPLTGEAIALSSVSDAMFASGKLGSGVAIVPTKGQLVSPVSGKIVVAFPSGHAFAV RTKAEDGSNVDILMHIGFDTVNLNGTHFNPLKKQGDEVKAGELLCEFDIDAIKAAGYEVTTPIVVSNYKKTGPVNTYGLG EIEAGANLLNVAKKEAVPATP
Specific function: The phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS), a major carbohydrate active -transport system, catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. This
COG id: COG1263
COG function: function code G; Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PTS EIIC type-1 domain [H]
Homologues:
Organism=Escherichia coli, GI1790159, Length=651, Percent_Identity=31.7972350230415, Blast_Score=297, Evalue=1e-81, Organism=Escherichia coli, GI2367362, Length=431, Percent_Identity=31.554524361949, Blast_Score=242, Evalue=6e-65, Organism=Escherichia coli, GI48994906, Length=458, Percent_Identity=25.764192139738, Blast_Score=145, Evalue=9e-36, Organism=Escherichia coli, GI1788769, Length=425, Percent_Identity=29.6470588235294, Blast_Score=125, Evalue=7e-30, Organism=Escherichia coli, GI1786894, Length=150, Percent_Identity=38.6666666666667, Blast_Score=98, Evalue=2e-21, Organism=Escherichia coli, GI1788757, Length=125, Percent_Identity=38.4, Blast_Score=94, Evalue=3e-20,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011055 - InterPro: IPR018113 - InterPro: IPR001127 - InterPro: IPR001996 - InterPro: IPR003352 - InterPro: IPR013013 - InterPro: IPR011535 - InterPro: IPR010973 [H]
Pfam domain/function: PF00358 PTS_EIIA_1; PF00367 PTS_EIIB; PF02378 PTS_EIIC [H]
EC number: =2.7.1.69 [H]
Molecular weight: Translated: 69198; Mature: 69198
Theoretical pI: Translated: 4.70; Mature: 4.70
Prosite motif: PS51093 PTS_EIIA_TYPE_1 ; PS01035 PTS_EIIB_TYPE_1_CYS ; PS51098 PTS_EIIB_TYPE_1 ; PS51103 PTS_EIIC_TYPE_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDHKDLAQRILRDIGGEDNIVAAAHCATRLRLVLKDTKDVDRQSLDDDPDLKGTFETGGM CCHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCEEECCCCE FQIIVGPGDVDHVFKELDDATSKDIAVSTEQLKDVVANNANWFSRAVKVLADIFVPLIPI EEEEECCCCHHHHHHHHHCCCCCCEEECHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH LVGGGLLMAINNVLVAQDLFGPQSLVEMFPQISGVAEMINLMASAPFAFLPVLVGFTATK HHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH RFGGNEFLGAGIGMAMVFPTLVNGYDVAATMAAGEMPMWSLFGLDVAQAGYQGTVLPVLV CCCCCCCHHCCHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHCCHHHHCCCCCCHHHHHH VSWILATIEKFLHKRLKGTADFLITPVLTLLLTGFLTFIAIGPAMRWVGDLLAHGLQGLY HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH DFGGPVGGLLFGLVYSPIVITGLHQSFPPIELELFNQGGSFIFATASMANIAQGAACLAV HCCCHHHHHHHHHHHHHHHEEHHHCCCCCEEEEEECCCCCEEEEECHHHHHHHHHHHHHH FFLAKSEKLKGLAGASGVSAVLGITEPAIFGVNLRLRWPFYIGIGTAAIGGALIALFDIK HHHHHHHHHCCCCCCCCHHHHHCCCCCEEEEEEEEEEEEEEEECCHHHHHHHHHHHHHHH AVALGAAGFLGVVSIDAPDMVMFLVCAVVTFFIAFGAAIAYGLYLVRRNGSIDPDATAAP HHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCC VTAGTTKAEAEAPAEFSNDSTIIQAPLTGEAIALSSVSDAMFASGKLGSGVAIVPTKGQL CCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEECHHHHHHHCCCCCCCCEEEEECCCCE VSPVSGKIVVAFPSGHAFAVRTKAEDGSNVDILMHIGFDTVNLNGTHFNPLKKQGDEVKA ECCCCCEEEEEECCCCEEEEEEECCCCCCEEEEEEECCEEEECCCCCCCHHHHCCCCCCC GELLCEFDIDAIKAAGYEVTTPIVVSNYKKTGPVNTYGLGEIEAGANLLNVAKKEAVPAT CCEEEEECHHHHHHCCCEEECCEEEECCCCCCCCCCCCCCCHHCCCHHHHHHHHCCCCCC P C >Mature Secondary Structure MDHKDLAQRILRDIGGEDNIVAAAHCATRLRLVLKDTKDVDRQSLDDDPDLKGTFETGGM CCHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCEEECCCCE FQIIVGPGDVDHVFKELDDATSKDIAVSTEQLKDVVANNANWFSRAVKVLADIFVPLIPI EEEEECCCCHHHHHHHHHCCCCCCEEECHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH LVGGGLLMAINNVLVAQDLFGPQSLVEMFPQISGVAEMINLMASAPFAFLPVLVGFTATK HHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH RFGGNEFLGAGIGMAMVFPTLVNGYDVAATMAAGEMPMWSLFGLDVAQAGYQGTVLPVLV CCCCCCCHHCCHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHCCHHHHCCCCCCHHHHHH VSWILATIEKFLHKRLKGTADFLITPVLTLLLTGFLTFIAIGPAMRWVGDLLAHGLQGLY HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH DFGGPVGGLLFGLVYSPIVITGLHQSFPPIELELFNQGGSFIFATASMANIAQGAACLAV HCCCHHHHHHHHHHHHHHHEEHHHCCCCCEEEEEECCCCCEEEEECHHHHHHHHHHHHHH FFLAKSEKLKGLAGASGVSAVLGITEPAIFGVNLRLRWPFYIGIGTAAIGGALIALFDIK HHHHHHHHHCCCCCCCCHHHHHCCCCCEEEEEEEEEEEEEEEECCHHHHHHHHHHHHHHH AVALGAAGFLGVVSIDAPDMVMFLVCAVVTFFIAFGAAIAYGLYLVRRNGSIDPDATAAP HHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCC VTAGTTKAEAEAPAEFSNDSTIIQAPLTGEAIALSSVSDAMFASGKLGSGVAIVPTKGQL CCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEECHHHHHHHCCCCCCCCEEEEECCCCE VSPVSGKIVVAFPSGHAFAVRTKAEDGSNVDILMHIGFDTVNLNGTHFNPLKKQGDEVKA ECCCCCEEEEEECCCCEEEEEEECCCCCCEEEEEEECCEEEECCCCCCCHHHHCCCCCCC GELLCEFDIDAIKAAGYEVTTPIVVSNYKKTGPVNTYGLGEIEAGANLLNVAKKEAVPAT CCEEEEECHHHHHHCCCEEECCEEEECCCCCCCCCCCCCCCHHCCCHHHHHHHHCCCCCC P C
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA