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The map label for this gene is yjfH [C]

Identifier: 145296637

GI number: 145296637

Start: 2809863

End: 2810804

Strand: Reverse

Name: yjfH [C]

Synonym: cgR_2545

Alternate gene names: 145296637

Gene position: 2810804-2809863 (Counterclockwise)

Preceding gene: 145296638

Following gene: 145296635

Centisome position: 84.81

GC content: 56.48

Gene sequence:

>942_bases
ATGGCAGGAAATGACAGTCGTCGAGGCGGCTTACGCAAGACCAATAAAAAAGGTGCAACCAAGGGCAGTGGCGGACAGGT
TCGTCGCGGTCTGAAAGGTAAGGGGCCTACCCCTAAGGCTGAGGACCGTACTTACCATGCAGCTCACAAGCGCAAGCTGG
AGCGCGAGCGTCGTGATCGCGGACGCCACCAGCGTGAAATGCCAGAGTTGGTTGTGGGACGTAACCCAGTTCTGGAGTGC
CTGCATGCACGCGTTCCAGCAACCGCTTTGTACGTTGCAGAAGGTGCGGCTAATGATGAGCGTCTGAGCGAGGCAGTGCA
TACCGCAGCTGGTCGCAACATTCCTGTGCTGGAGGTTAACAAGCTGGAGCTGGATCGTATGACCGGCAACGGCATGCACC
AGGGCATCGGCCTGGCGATCCCTCCTTACGAGTACGCAGATGTTCATGATCTGATCGCCAATGCTGCGACTTCTAAGAAG
CCAGGCATGTTCGTGATTCTGGATAACATTACTGACCCTCGTAACTTGGGTGCTGTGATTCGTTCCGTCGGTGCTTTCGG
TGGCAACGGTGTGATCATTCCGGAGCGTCGTTCAGCATCTGTGACCGCTGTTGCATGGCGTACTTCTGCTGGTACCGCAG
CGCGTGTGCCAGTGGCGAAGGAAACCAACATGACTCGTGTCGTGAAAGAATTCCAGCAAAACGGTTACCAGGTCGTCGGC
CTTGATGCTGGTGGCGACCATACTTTGGACACCTACGACGGCACCGACAACGTTGTCATCGTCGTCGGTTCTGAGGGCAA
GGGAATTTCCCGTCTGGTTCGCGAAAACTGCGACACCATCATGTCCATACCCACTGAGGGCTGGGTTGAATCGCTGAACG
CTTCGGTTGCTGCCGGCGTCGTGCTGTCGGAGTTCTCGCGCCAGCGTCGCATTAAGGGTTAA

Upstream 100 bases:

>100_bases
GATCGTCTTGCCGATGCCGGTATTGAGGTTGTGGATACCGCAGATGGCGCTACATGGAAATTGCAGTAATTACAGACACT
TTTAAGGAGACAATTTAAAC

Downstream 100 bases:

>100_bases
GCCGGAGGTTGGCGTCGAAAAGCAAAATGCTTTTCGACGCTTCCCTATACTTTGGGCATGGCTAATTCTTCATCGGGGGA
AACGGTGTTGCAACGCACCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 313; Mature: 312

Protein sequence:

>313_residues
MAGNDSRRGGLRKTNKKGATKGSGGQVRRGLKGKGPTPKAEDRTYHAAHKRKLERERRDRGRHQREMPELVVGRNPVLEC
LHARVPATALYVAEGAANDERLSEAVHTAAGRNIPVLEVNKLELDRMTGNGMHQGIGLAIPPYEYADVHDLIANAATSKK
PGMFVILDNITDPRNLGAVIRSVGAFGGNGVIIPERRSASVTAVAWRTSAGTAARVPVAKETNMTRVVKEFQQNGYQVVG
LDAGGDHTLDTYDGTDNVVIVVGSEGKGISRLVRENCDTIMSIPTEGWVESLNASVAAGVVLSEFSRQRRIKG

Sequences:

>Translated_313_residues
MAGNDSRRGGLRKTNKKGATKGSGGQVRRGLKGKGPTPKAEDRTYHAAHKRKLERERRDRGRHQREMPELVVGRNPVLEC
LHARVPATALYVAEGAANDERLSEAVHTAAGRNIPVLEVNKLELDRMTGNGMHQGIGLAIPPYEYADVHDLIANAATSKK
PGMFVILDNITDPRNLGAVIRSVGAFGGNGVIIPERRSASVTAVAWRTSAGTAARVPVAKETNMTRVVKEFQQNGYQVVG
LDAGGDHTLDTYDGTDNVVIVVGSEGKGISRLVRENCDTIMSIPTEGWVESLNASVAAGVVLSEFSRQRRIKG
>Mature_312_residues
AGNDSRRGGLRKTNKKGATKGSGGQVRRGLKGKGPTPKAEDRTYHAAHKRKLERERRDRGRHQREMPELVVGRNPVLECL
HARVPATALYVAEGAANDERLSEAVHTAAGRNIPVLEVNKLELDRMTGNGMHQGIGLAIPPYEYADVHDLIANAATSKKP
GMFVILDNITDPRNLGAVIRSVGAFGGNGVIIPERRSASVTAVAWRTSAGTAARVPVAKETNMTRVVKEFQQNGYQVVGL
DAGGDHTLDTYDGTDNVVIVVGSEGKGISRLVRENCDTIMSIPTEGWVESLNASVAAGVVLSEFSRQRRIKG

Specific function: Unknown

COG id: COG0566

COG function: function code J; rRNA methylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family [H]

Homologues:

Organism=Homo sapiens, GI40068479, Length=260, Percent_Identity=30.3846153846154, Blast_Score=106, Evalue=3e-23,
Organism=Escherichia coli, GI1790623, Length=248, Percent_Identity=37.0967741935484, Blast_Score=154, Evalue=9e-39,
Organism=Escherichia coli, GI1788935, Length=251, Percent_Identity=27.8884462151394, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI1790083, Length=176, Percent_Identity=28.4090909090909, Blast_Score=65, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17555908, Length=267, Percent_Identity=28.4644194756554, Blast_Score=85, Evalue=6e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004441
- InterPro:   IPR001537
- InterPro:   IPR013123 [H]

Pfam domain/function: PF00588 SpoU_methylase; PF08032 SpoU_sub_bind [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 33687; Mature: 33555

Theoretical pI: Translated: 10.33; Mature: 10.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGNDSRRGGLRKTNKKGATKGSGGQVRRGLKGKGPTPKAEDRTYHAAHKRKLERERRDR
CCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
GRHQREMPELVVGRNPVLECLHARVPATALYVAEGAANDERLSEAVHTAAGRNIPVLEVN
HHHHHHCHHHHHCCCHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEC
KLELDRMTGNGMHQGIGLAIPPYEYADVHDLIANAATSKKPGMFVILDNITDPRNLGAVI
CEEEECCCCCCCCCCCCEECCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHH
RSVGAFGGNGVIIPERRSASVTAVAWRTSAGTAARVPVAKETNMTRVVKEFQQNGYQVVG
HHHHCCCCCCEEEECCCCCCEEEEEEECCCCCEEECCCCCCCCHHHHHHHHHHCCCEEEE
LDAGGDHTLDTYDGTDNVVIVVGSEGKGISRLVRENCDTIMSIPTEGWVESLNASVAAGV
ECCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHCCHHEEECCCHHHHHHHCHHHHHHH
VLSEFSRQRRIKG
HHHHHHHHHCCCC
>Mature Secondary Structure 
AGNDSRRGGLRKTNKKGATKGSGGQVRRGLKGKGPTPKAEDRTYHAAHKRKLERERRDR
CCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
GRHQREMPELVVGRNPVLECLHARVPATALYVAEGAANDERLSEAVHTAAGRNIPVLEVN
HHHHHHCHHHHHCCCHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEC
KLELDRMTGNGMHQGIGLAIPPYEYADVHDLIANAATSKKPGMFVILDNITDPRNLGAVI
CEEEECCCCCCCCCCCCEECCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHH
RSVGAFGGNGVIIPERRSASVTAVAWRTSAGTAARVPVAKETNMTRVVKEFQQNGYQVVG
HHHHCCCCCCEEEECCCCCCEEEEEEECCCCCEEECCCCCCCCHHHHHHHHHHCCCEEEE
LDAGGDHTLDTYDGTDNVVIVVGSEGKGISRLVRENCDTIMSIPTEGWVESLNASVAAGV
ECCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHCCHHEEECCCHHHHHHHCHHHHHHH
VLSEFSRQRRIKG
HHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA