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The map label for this gene is ycdC [C]

Identifier: 145296348

GI number: 145296348

Start: 2493807

End: 2494586

Strand: Direct

Name: ycdC [C]

Synonym: cgR_2263

Alternate gene names: 145296348

Gene position: 2493807-2494586 (Clockwise)

Preceding gene: 145296345

Following gene: 145296350

Centisome position: 75.25

GC content: 50.13

Gene sequence:

>780_bases
ATGGCGACATCACATCGAGATGCCGAAAACCTAGACCAGGCCGGTAGCGAATTCACTGAATCTGATTCAGGACACACCGC
AACCCCTGAAGAGGTAGTAGCCACCGCTCTAACATTTTTTGCAGAGAACGGTTTTAGCGAAACCAAATTGGAAAAAATCG
CGAAGGCATCTGGCATGTCCAAGCGCATGATCCACTACCACTTTGGCGATAAAAAGGGCCTGTACATCAAGGCTGTTTCC
TACGCTTTGCGCTTGCTGCGCCCAGAGGCTGAAGCGATGCAGCTTGATTCTGCGGTACCAGTTGATGGTGTGCGCAAAAT
CGTCGAGGTTTTATACACTTGCATCACCAAGCACCCAGAAGCAGTGCGCCTGTTGCTGATGGAAAACCTACATAGCAAAG
ACAGCGTGGATTCCACCGCGGCATATTCCGATGAATCCAATGTGCTGCTCAACCTGGACAAGCTGCTCATGCTTGGCCAG
GACGCCGGCGCCTTCCGTCCTGGAATCTCCGCAGAAGACGTACTGGTTCTTATTAGCTCCCTAGCTTACTTCCGCGTATC
CAACAAGGTCACGTTGAAGAACCTCTACTCTCTTGATTTGGAATCAGAGGCCAATATTGAAGGCATGAAGCGCATCGTTG
TTGACACGGTGCTGGCATTCCTCACCTCCAATATTCAAAATTCTGGCAACTCCAGCTACCTGGTTGTTGGTGGCAAAACT
GCAGAGCCAGAAACCGATGACACTGTCTACAGCTTTGATACGGACGTGTTCGAAAACTAA

Upstream 100 bases:

>100_bases
AGTTGTCAGTTTGGATTTACCGATGGTGTTACCTTTGATATTTACTTTGACTCCGTTTCTAGTTCACGTTTTCTCGTTAC
CCGAAAGGAATTGATCGATT

Downstream 100 bases:

>100_bases
AGAGTATCGAGTAGTTTCAAGCCCTTTTCTGCCCATTCAATCTCTGCCTGAGCGCGCGCAATCTGCCCCTCATAGGCAAG
CACTTTAAACGCGACTATTC

Product: hypothetical protein

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator; Transcriptional Regulator Protein; TetR Family Regulatory Protein; Transcriptional Regulator TetR/ArcR Family; HTH-Type Transcriptional Regulator; Transcriptional Regulator Protein TetR Family; Transcriptional Regulator TetR Family Protein; Transcriptional Regulator Tetr Family; TetR-Family Transcriptional Regulator; TetR-Family Transcriptional Regulatory Protein; TRANSCRIPTIONal REGULATOR TetR Family; Transcription Regulator Protein Tetr-Like; Transcription Regulator; Regulatory Protein TetR; Transcriptional Regulator TetR; TetR/AcrR Family Transcriptional Regulator

Number of amino acids: Translated: 259; Mature: 258

Protein sequence:

>259_residues
MATSHRDAENLDQAGSEFTESDSGHTATPEEVVATALTFFAENGFSETKLEKIAKASGMSKRMIHYHFGDKKGLYIKAVS
YALRLLRPEAEAMQLDSAVPVDGVRKIVEVLYTCITKHPEAVRLLLMENLHSKDSVDSTAAYSDESNVLLNLDKLLMLGQ
DAGAFRPGISAEDVLVLISSLAYFRVSNKVTLKNLYSLDLESEANIEGMKRIVVDTVLAFLTSNIQNSGNSSYLVVGGKT
AEPETDDTVYSFDTDVFEN

Sequences:

>Translated_259_residues
MATSHRDAENLDQAGSEFTESDSGHTATPEEVVATALTFFAENGFSETKLEKIAKASGMSKRMIHYHFGDKKGLYIKAVS
YALRLLRPEAEAMQLDSAVPVDGVRKIVEVLYTCITKHPEAVRLLLMENLHSKDSVDSTAAYSDESNVLLNLDKLLMLGQ
DAGAFRPGISAEDVLVLISSLAYFRVSNKVTLKNLYSLDLESEANIEGMKRIVVDTVLAFLTSNIQNSGNSSYLVVGGKT
AEPETDDTVYSFDTDVFEN
>Mature_258_residues
ATSHRDAENLDQAGSEFTESDSGHTATPEEVVATALTFFAENGFSETKLEKIAKASGMSKRMIHYHFGDKKGLYIKAVSY
ALRLLRPEAEAMQLDSAVPVDGVRKIVEVLYTCITKHPEAVRLLLMENLHSKDSVDSTAAYSDESNVLLNLDKLLMLGQD
AGAFRPGISAEDVLVLISSLAYFRVSNKVTLKNLYSLDLESEANIEGMKRIVVDTVLAFLTSNIQNSGNSSYLVVGGKTA
EPETDDTVYSFDTDVFEN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 28373; Mature: 28242

Theoretical pI: Translated: 4.54; Mature: 4.54

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATSHRDAENLDQAGSEFTESDSGHTATPEEVVATALTFFAENGFSETKLEKIAKASGMS
CCCCCCCHHHHHHHCCHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC
KRMIHYHFGDKKGLYIKAVSYALRLLRPEAEAMQLDSAVPVDGVRKIVEVLYTCITKHPE
HHEEEEEECCCCCCHHHHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHH
AVRLLLMENLHSKDSVDSTAAYSDESNVLLNLDKLLMLGQDAGAFRPGISAEDVLVLISS
HHHHHHHHHCCCCCCCCCHHCCCCCCCEEEEHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
LAYFRVSNKVTLKNLYSLDLESEANIEGMKRIVVDTVLAFLTSNIQNSGNSSYLVVGGKT
HHHHHCCCCEEEHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCC
AEPETDDTVYSFDTDVFEN
CCCCCCCCEEECCCHHHCC
>Mature Secondary Structure 
ATSHRDAENLDQAGSEFTESDSGHTATPEEVVATALTFFAENGFSETKLEKIAKASGMS
CCCCCCHHHHHHHCCHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC
KRMIHYHFGDKKGLYIKAVSYALRLLRPEAEAMQLDSAVPVDGVRKIVEVLYTCITKHPE
HHEEEEEECCCCCCHHHHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHH
AVRLLLMENLHSKDSVDSTAAYSDESNVLLNLDKLLMLGQDAGAFRPGISAEDVLVLISS
HHHHHHHHHCCCCCCCCCHHCCCCCCCEEEEHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
LAYFRVSNKVTLKNLYSLDLESEANIEGMKRIVVDTVLAFLTSNIQNSGNSSYLVVGGKT
HHHHHCCCCEEEHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCC
AEPETDDTVYSFDTDVFEN
CCCCCCCCEEECCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA