Click here to switch to the map view.

The map label for this gene is ydhC [H]

Identifier: 145296281

GI number: 145296281

Start: 2425855

End: 2426577

Strand: Direct

Name: ydhC [H]

Synonym: cgR_2198

Alternate gene names: 145296281

Gene position: 2425855-2426577 (Clockwise)

Preceding gene: 145296277

Following gene: 145296282

Centisome position: 73.2

GC content: 54.77

Gene sequence:

>723_bases
ATGTCAGACATGCCAACAAAAAGGGTTGCCCCCGCACGCTCACTCACCGACCAAGTCATGGATTTCGTCCGCGAATCCAC
CCTTGATAAAACAATGGTCACCGGAGAGTGGTACAGCGTTTACCAGGTCAGCGACCAATTAGGCATCTCCCGCTCCCCCG
TCAGAGACGCGCTGCTCCGCCTGGAAGAAGCAGGGCTCATCCGCTTCACCAGGAACCGCGGATTCCAAATTGTCGAAACC
AAACCCTCTGATGTCGCCGAAATTTTTGCCCTTCGTCTAGGCATTGAACCCGCCGCAGCATACCGGGCAGCACAGCTACG
CACCGAAGTACAGCTCGGCGAAGCAGATGACATCATTGCACTCATGGCGCAAGCCAAGGCCGACAATGATGAAGAAGCGT
TTTTCGCCCATGACCGACAGTTTCACCGACAAATCATGACGATGGGACACTCCCAACGCGGGGCTGACCTTGTAGAAAAA
CTTCGCGCGCACACCCGCATCCTTGGCGCCTCCACCGCCGGCGACAAGCGCACCCTTGGCGATATTTTGGAAGAACACGA
ACCAATCTTGGATGCCATCAAACGACAATCAGCAGAAATGGCACGAGCCACCATGCGGGAGCATATCCAAGTCACCGGAA
AGCTACTACTAGAACAAGCAGTGGAAAAATCCGGCGAAGGAGACCCAAAGGAAATTTGGGATCAGTACACGGCGGGAGTT
TAG

Upstream 100 bases:

>100_bases
TGAATTTGATGGTGTGAGTCATGGTGGGTCCTTTTGTGAAATTCGATCCAAGCGGGCTTTGAGTAACATGTTACCGGTTA
CTGTGGTGAATTGTGCGATA

Downstream 100 bases:

>100_bases
GCATATTTACCTAATCAATTTCATGCTGAACAGTATCGGAGCCAGTTGGACGGCCGGGCCGGTACCTCAACACAAATGCA
CACACTGCACAAAGTGTCGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 240; Mature: 239

Protein sequence:

>240_residues
MSDMPTKRVAPARSLTDQVMDFVRESTLDKTMVTGEWYSVYQVSDQLGISRSPVRDALLRLEEAGLIRFTRNRGFQIVET
KPSDVAEIFALRLGIEPAAAYRAAQLRTEVQLGEADDIIALMAQAKADNDEEAFFAHDRQFHRQIMTMGHSQRGADLVEK
LRAHTRILGASTAGDKRTLGDILEEHEPILDAIKRQSAEMARATMREHIQVTGKLLLEQAVEKSGEGDPKEIWDQYTAGV

Sequences:

>Translated_240_residues
MSDMPTKRVAPARSLTDQVMDFVRESTLDKTMVTGEWYSVYQVSDQLGISRSPVRDALLRLEEAGLIRFTRNRGFQIVET
KPSDVAEIFALRLGIEPAAAYRAAQLRTEVQLGEADDIIALMAQAKADNDEEAFFAHDRQFHRQIMTMGHSQRGADLVEK
LRAHTRILGASTAGDKRTLGDILEEHEPILDAIKRQSAEMARATMREHIQVTGKLLLEQAVEKSGEGDPKEIWDQYTAGV
>Mature_239_residues
SDMPTKRVAPARSLTDQVMDFVRESTLDKTMVTGEWYSVYQVSDQLGISRSPVRDALLRLEEAGLIRFTRNRGFQIVETK
PSDVAEIFALRLGIEPAAAYRAAQLRTEVQLGEADDIIALMAQAKADNDEEAFFAHDRQFHRQIMTMGHSQRGADLVEKL
RAHTRILGASTAGDKRTLGDILEEHEPILDAIKRQSAEMARATMREHIQVTGKLLLEQAVEKSGEGDPKEIWDQYTAGV

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=206, Percent_Identity=25.2427184466019, Blast_Score=67, Evalue=8e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 26880; Mature: 26749

Theoretical pI: Translated: 5.23; Mature: 5.23

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDMPTKRVAPARSLTDQVMDFVRESTLDKTMVTGEWYSVYQVSDQLGISRSPVRDALLR
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHEEEHHHHCCCCCHHHHHHHH
LEEAGLIRFTRNRGFQIVETKPSDVAEIFALRLGIEPAAAYRAAQLRTEVQLGEADDIIA
HHHCCCEEEECCCCEEEEECCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHH
LMAQAKADNDEEAFFAHDRQFHRQIMTMGHSQRGADLVEKLRAHTRILGASTAGDKRTLG
HHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHH
DILEEHEPILDAIKRQSAEMARATMREHIQVTGKLLLEQAVEKSGEGDPKEIWDQYTAGV
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCC
>Mature Secondary Structure 
SDMPTKRVAPARSLTDQVMDFVRESTLDKTMVTGEWYSVYQVSDQLGISRSPVRDALLR
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHEEEHHHHCCCCCHHHHHHHH
LEEAGLIRFTRNRGFQIVETKPSDVAEIFALRLGIEPAAAYRAAQLRTEVQLGEADDIIA
HHHCCCEEEECCCCEEEEECCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHH
LMAQAKADNDEEAFFAHDRQFHRQIMTMGHSQRGADLVEKLRAHTRILGASTAGDKRTLG
HHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHH
DILEEHEPILDAIKRQSAEMARATMREHIQVTGKLLLEQAVEKSGEGDPKEIWDQYTAGV
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]