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The map label for this gene is ybeY [C]

Identifier: 145296242

GI number: 145296242

Start: 2381961

End: 2382551

Strand: Reverse

Name: ybeY [C]

Synonym: cgR_2159

Alternate gene names: 145296242

Gene position: 2382551-2381961 (Counterclockwise)

Preceding gene: 145296243

Following gene: 145296241

Centisome position: 71.89

GC content: 59.22

Gene sequence:

>591_bases
ATGAGCATTGAAGTATTCAACGAATCAGGATATGACGGCGTCAATGAAGAAATGCTCATTGATGTCCTCTCCTTCGCACT
CGGGGAAATGGACATCCACCCCGACGCCGAAGCATCCATCCACATCGTCGACCTCGACACCATCGCCGATCTCCACGTGA
AATGGCTTGACCTCGAAGGCCCAACCGACGTGATGAGCTTCCCCATGGATGAGCTTACCCCCGGCTACTCCCGCCCCGAC
GGCGCCACCCCCGGCCCCGCCATGCTGGGAGACATTGTGCTGTGCCCAGAGTTCGCGGCAAAGCAAGCGACCAAAGCAGG
CCACGACTTAGCCCACGAACTGGCGCTTTTGACCGTGCACGGCAGCCTGCACCTGCTTGGCTACGACCACGTCGATCCGG
CCGAAGAGCGTGAAATGTTCGCCCTCCAAAACGAGCTGCTTGCCGATTGGTACGACAACGTCGAAGCCCGCGGCGTCACC
TACCAGCCAAAACCATCCGGCGCCGGTGCATTCCCCACCGCTGCTGATCGTCTGGAATTGGACGAGAAGATGGAAGCGGA
TGACTCTGGCTTTGGAGGCGTTGAGTCCTAG

Upstream 100 bases:

>100_bases
TGGTCCGCCACCAACTGGTTGGACACATTGTGGATGCATACGAAGACTATGAAGAACGCGAGGCCCGCGAATTGAAACGC
AAACGCCAGGAGACACGGCC

Downstream 100 bases:

>100_bases
GTGGAATCCTCAGTTATATGGTTGAGCATCGCCACTGTCGTTGCGCTGCTCTTCTCCGGTCTATTAGGTGCAGTTGAATC
TGCGCTTTCTTCTGTTTCCC

Product: putative metalloprotease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 196; Mature: 195

Protein sequence:

>196_residues
MSIEVFNESGYDGVNEEMLIDVLSFALGEMDIHPDAEASIHIVDLDTIADLHVKWLDLEGPTDVMSFPMDELTPGYSRPD
GATPGPAMLGDIVLCPEFAAKQATKAGHDLAHELALLTVHGSLHLLGYDHVDPAEEREMFALQNELLADWYDNVEARGVT
YQPKPSGAGAFPTAADRLELDEKMEADDSGFGGVES

Sequences:

>Translated_196_residues
MSIEVFNESGYDGVNEEMLIDVLSFALGEMDIHPDAEASIHIVDLDTIADLHVKWLDLEGPTDVMSFPMDELTPGYSRPD
GATPGPAMLGDIVLCPEFAAKQATKAGHDLAHELALLTVHGSLHLLGYDHVDPAEEREMFALQNELLADWYDNVEARGVT
YQPKPSGAGAFPTAADRLELDEKMEADDSGFGGVES
>Mature_195_residues
SIEVFNESGYDGVNEEMLIDVLSFALGEMDIHPDAEASIHIVDLDTIADLHVKWLDLEGPTDVMSFPMDELTPGYSRPDG
ATPGPAMLGDIVLCPEFAAKQATKAGHDLAHELALLTVHGSLHLLGYDHVDPAEEREMFALQNELLADWYDNVEARGVTY
QPKPSGAGAFPTAADRLELDEKMEADDSGFGGVES

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family

Homologues:

Organism=Escherichia coli, GI1786880, Length=113, Percent_Identity=37.1681415929204, Blast_Score=68, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRMF_CORGB (A4QFZ5)

Other databases:

- EMBL:   AP009044
- RefSeq:   YP_001139063.1
- ProteinModelPortal:   A4QFZ5
- SMR:   A4QFZ5
- STRING:   A4QFZ5
- GeneID:   4992702
- GenomeReviews:   AP009044_GR
- KEGG:   cgt:cgR_2159
- eggNOG:   COG0319
- HOGENOM:   HBG734136
- OMA:   LNGYDHM
- ProtClustDB:   PRK00016
- HAMAP:   MF_00009
- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036
- Gene3D:   G3DSA:3.40.390.30
- TIGRFAMs:   TIGR00043

Pfam domain/function: PF02130 UPF0054

EC number: NA

Molecular weight: Translated: 21242; Mature: 21111

Theoretical pI: Translated: 3.88; Mature: 3.88

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIEVFNESGYDGVNEEMLIDVLSFALGEMDIHPDAEASIHIVDLDTIADLHVKWLDLEG
CEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCEEEEEECCC
PTDVMSFPMDELTPGYSRPDGATPGPAMLGDIVLCPEFAAKQATKAGHDLAHELALLTVH
CHHHHHCCHHHCCCCCCCCCCCCCCHHHHCCEEECCCHHHHHHHHHHHHHHHHEEEEEEC
GSLHLLGYDHVDPAEEREMFALQNELLADWYDNVEARGVTYQPKPSGAGAFPTAADRLEL
CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCHHHHCC
DEKMEADDSGFGGVES
HHHHCCCCCCCCCCCC
>Mature Secondary Structure 
SIEVFNESGYDGVNEEMLIDVLSFALGEMDIHPDAEASIHIVDLDTIADLHVKWLDLEG
EEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCEEEEEECCC
PTDVMSFPMDELTPGYSRPDGATPGPAMLGDIVLCPEFAAKQATKAGHDLAHELALLTVH
CHHHHHCCHHHCCCCCCCCCCCCCCHHHHCCEEECCCHHHHHHHHHHHHHHHHEEEEEEC
GSLHLLGYDHVDPAEEREMFALQNELLADWYDNVEARGVTYQPKPSGAGAFPTAADRLEL
CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCHHHHCC
DEKMEADDSGFGGVES
HHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA