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The map label for this gene is yggS [C]

Identifier: 145296115

GI number: 145296115

Start: 2241415

End: 2242119

Strand: Reverse

Name: yggS [C]

Synonym: cgR_2035

Alternate gene names: 145296115

Gene position: 2242119-2241415 (Counterclockwise)

Preceding gene: 145296116

Following gene: 145296114

Centisome position: 67.65

GC content: 53.76

Gene sequence:

>705_bases
TTGGAGCGCCGCGAAGAGCTGCAGGTACGACTGCAGCAGGTGCAAGCGCGTATCGACGCGACCCTCAACGAACACAACCG
CCCCGAGGGCAGTGTACGTTTGTTGCCGGTCACCAAATTCCACCCCGTGGAAGACATCAAGATCTTACAAGAGCTTGGTG
TCACCGCAGTGGGAGAAAACCGCGAACAAGAAGCACGCGCCAAAGCACTCGAACTTCCCGACATGGACTTTCATATGATT
GGCCAAATCCAATCAAAGAAAGCCAACTCGATCGCCAGGTGGTCAGCTGCAGTGCACTCCGTTGATAGCGAGAAAATCGC
CGAAGCATTGGGCAGGGGAGTAGCCCTTGCATTGGAAAGAGGCGACCGCACCAGTGACGAGCTGCCGTGTTTTATTCAAC
TGAGCTTGGATGGTGACCCGAGCCGAGGTGGAACTCCATTGAGCCAGGTCACACAACTTGCCGATTGCATCAGTGACACC
ACACATCTGCGTTTTGAGGGCCTCATGTGCGTCCCACCGCTTGGTTGGGACCCTGAAAAAGCTTTTTCCCAGGCAAGAGA
CGTACTTTCAGGTTTAGAGGAACACTTTGACAGGTCTTTGGAATTTTCGGCAGGTATGTCTGGAGACCTAGTTGCTGCGA
TTAAACACGGCTCAACAATCGTGCGTGTCGGAACTGAAATTCTTGGGAACCGACCGCTAGCGTAG

Upstream 100 bases:

>100_bases
CCACGTTGCACCATCGAAGACGAAGATCTGTTTTCTTACCGCCGCGAAGGCACGACAGGCCGCCAGGCCGGCGTGGTGTG
GCTGCCAAAGGAGGCATAAA

Downstream 100 bases:

>100_bases
AAAATCAAGTTAAGGGTGTGACGAGCACCCCAGCTGCACATGAAATTTAAGACATTCCAGGTGAAGGGAAACTGCCATGT
CCATGCTCAAGAAGACTAAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 234; Mature: 234

Protein sequence:

>234_residues
MERREELQVRLQQVQARIDATLNEHNRPEGSVRLLPVTKFHPVEDIKILQELGVTAVGENREQEARAKALELPDMDFHMI
GQIQSKKANSIARWSAAVHSVDSEKIAEALGRGVALALERGDRTSDELPCFIQLSLDGDPSRGGTPLSQVTQLADCISDT
THLRFEGLMCVPPLGWDPEKAFSQARDVLSGLEEHFDRSLEFSAGMSGDLVAAIKHGSTIVRVGTEILGNRPLA

Sequences:

>Translated_234_residues
MERREELQVRLQQVQARIDATLNEHNRPEGSVRLLPVTKFHPVEDIKILQELGVTAVGENREQEARAKALELPDMDFHMI
GQIQSKKANSIARWSAAVHSVDSEKIAEALGRGVALALERGDRTSDELPCFIQLSLDGDPSRGGTPLSQVTQLADCISDT
THLRFEGLMCVPPLGWDPEKAFSQARDVLSGLEEHFDRSLEFSAGMSGDLVAAIKHGSTIVRVGTEILGNRPLA
>Mature_234_residues
MERREELQVRLQQVQARIDATLNEHNRPEGSVRLLPVTKFHPVEDIKILQELGVTAVGENREQEARAKALELPDMDFHMI
GQIQSKKANSIARWSAAVHSVDSEKIAEALGRGVALALERGDRTSDELPCFIQLSLDGDPSRGGTPLSQVTQLADCISDT
THLRFEGLMCVPPLGWDPEKAFSQARDVLSGLEEHFDRSLEFSAGMSGDLVAAIKHGSTIVRVGTEILGNRPLA

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=238, Percent_Identity=28.5714285714286, Blast_Score=72, Evalue=5e-13,
Organism=Escherichia coli, GI1789321, Length=232, Percent_Identity=31.0344827586207, Blast_Score=96, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI17533025, Length=217, Percent_Identity=30.4147465437788, Blast_Score=73, Evalue=1e-13,
Organism=Saccharomyces cerevisiae, GI6319435, Length=244, Percent_Identity=28.2786885245902, Blast_Score=89, Evalue=7e-19,
Organism=Drosophila melanogaster, GI45550861, Length=244, Percent_Identity=31.1475409836066, Blast_Score=84, Evalue=6e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 25694; Mature: 25694

Theoretical pI: Translated: 5.04; Mature: 5.04

Prosite motif: PS01211 UPF0001

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MERREELQVRLQQVQARIDATLNEHNRPEGSVRLLPVTKFHPVEDIKILQELGVTAVGEN
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHCCCEECCCC
REQEARAKALELPDMDFHMIGQIQSKKANSIARWSAAVHSVDSEKIAEALGRGVALALER
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCEEEEEEC
GDRTSDELPCFIQLSLDGDPSRGGTPLSQVTQLADCISDTTHLRFEGLMCVPPLGWDPEK
CCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEECCEEEECCCCCCHHH
AFSQARDVLSGLEEHFDRSLEFSAGMSGDLVAAIKHGSTIVRVGTEILGNRPLA
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCEEEEECHHHHCCCCCC
>Mature Secondary Structure
MERREELQVRLQQVQARIDATLNEHNRPEGSVRLLPVTKFHPVEDIKILQELGVTAVGEN
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHCCCEECCCC
REQEARAKALELPDMDFHMIGQIQSKKANSIARWSAAVHSVDSEKIAEALGRGVALALER
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCEEEEEEC
GDRTSDELPCFIQLSLDGDPSRGGTPLSQVTQLADCISDTTHLRFEGLMCVPPLGWDPEK
CCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEECCEEEECCCCCCHHH
AFSQARDVLSGLEEHFDRSLEFSAGMSGDLVAAIKHGSTIVRVGTEILGNRPLA
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCEEEEECHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9240446; 12948626 [H]