| Definition | Corynebacterium glutamicum R chromosome, complete genome. |
|---|---|
| Accession | NC_009342 |
| Length | 3,314,179 |
Click here to switch to the map view.
The map label for this gene is polC [H]
Identifier: 145296078
GI number: 145296078
Start: 2198356
End: 2199759
Strand: Direct
Name: polC [H]
Synonym: cgR_2000
Alternate gene names: 145296078
Gene position: 2198356-2199759 (Clockwise)
Preceding gene: 145296073
Following gene: 145296079
Centisome position: 66.33
GC content: 52.35
Gene sequence:
>1404_bases GTGATCGCGGCTTACGGCGCATCCATCTCTTTGGATGATTCCACCCTCACCATCTCTTATTCCCCTCTTCTTGCTGCTCT TTCTAAGTCCAGCGCACAATCGGAATCGGTTGATCTGACACAGGTCTCTGGAGTATCTGTGCAGGATCCCACTGCTTTTA CTCACGGCTTTTTAAACCTGGAGGGCGTGGATAAATCCATCGCCTTTGCCCCAAATAGTTCGGCAGATTTAGATGCGCTG GCAGCTGATATTGATGCTGTGTTGAAGGGTGAAAAACCACAGCACCTGGGTGGCGGAGCCCTAGTAGTGCCTTCAGCTCC ATCTACTGTTGCTGGTCTGAATTTCGTGGGCTTTGACGTAGAGACGGCCAATGATGATTGGGGTTCCATCTGCCAGATTG GTTTGGTCAAGTACGTCGATGGTGTGGAGGAATCTTCGGAGTCATGGTTGTGTACTCCTCCTGAGAGCCTGAATTTCTTC AATGAGATCAACATTGGTATTCACGGCATCACCCCAGAGATGGTTGCTGATCAGCCTCGTTTTGCAGACCTTGTGCCCAA GATGGTGGAGTTCGTTGGGGATTTGCCGTTGGTTGCTCACAATGCGCAGTTTGATTTCACCGCATTGTCTCGCGCGTGTG CTGCCTCAGGGATCGATGTCCCAGAGATGATTTATGGCTGCTCGTTGACGTTGGCACGCAATGAGAAGCTGCAGGTGGAA AACCATAAGCTTCCAACGGTGGCTAGTCATTTAGGGGTTGAGCTGAAAAACCACCACGATGCTGCTGAAGATGCTCGCGC GTGTGCTGCGATTACCATTGCGTTGGCAAAGCGCCACAGCTTTGAGGGCAGCTTTGTGGATTTCGTTCACAGCCGTGGTT TCACCATGGGAACCGTGGATAACGCCCGGGTGTATCCGGTGCTGAAGGATCGTTCTGGAGCTAACGTTGCGTTGCAGCGT CGAAACTTTGGTTTGGATGCAGGCAAGACCGAAGTCCCCGTGCAGCCAGCTGTTGATCCAGCGTGGGAAACCCCGAGGGC GGAGCCAAAAAAGCAATCTGGCCGCCGTGCACCGTGGGACAAGGTGGCTACCCCTGAGGTCATTCCAGATCCCAATCCCG ATGCTGATCCAGCAAGCATTCTCTATGGCCAGAATGTCACCTTGACTGGTGATTTCGAGCCATATGAAAAGGGTGCGCTG TGGCAGCAGATCGCTGATCAAGGCGCGCTGATCGGTAAGAACGTGACTAAGAAGACCACCATCTTGGTCGCAGGCCCGTG GGCAACGATTACCAGTAAGCAAAAACGTGCTGAGGAGTTGAAAGAAAAAGGACAGGACATCCAGATCTGGGATGAAAAGC AGCTGTTTACGGCTCTTGGGTTAGATGAACAACCCCCGTTTTAA
Upstream 100 bases:
>100_bases CCACGTCCAGAATCTTCTTGAATTCCCCGGCGCGCTTAAATGATGTCCACCCCACCTAGTAGGGTGGTGTCCATTGATTC AGATCGAAAGGACCACACCT
Downstream 100 bases:
>100_bases AAGAATTTTCTAAAACTCGGGAACCTTCAGCCAACTTTTCAAGTCCAACCCTTTTAAGAACACATTTTTTCTTAAAGGGG ACGACATGAAAGTACCTATT
Product: hypothetical protein
Products: NA
Alternate protein names: PolIII [H]
Number of amino acids: Translated: 467; Mature: 467
Protein sequence:
>467_residues MIAAYGASISLDDSTLTISYSPLLAALSKSSAQSESVDLTQVSGVSVQDPTAFTHGFLNLEGVDKSIAFAPNSSADLDAL AADIDAVLKGEKPQHLGGGALVVPSAPSTVAGLNFVGFDVETANDDWGSICQIGLVKYVDGVEESSESWLCTPPESLNFF NEINIGIHGITPEMVADQPRFADLVPKMVEFVGDLPLVAHNAQFDFTALSRACAASGIDVPEMIYGCSLTLARNEKLQVE NHKLPTVASHLGVELKNHHDAAEDARACAAITIALAKRHSFEGSFVDFVHSRGFTMGTVDNARVYPVLKDRSGANVALQR RNFGLDAGKTEVPVQPAVDPAWETPRAEPKKQSGRRAPWDKVATPEVIPDPNPDADPASILYGQNVTLTGDFEPYEKGAL WQQIADQGALIGKNVTKKTTILVAGPWATITSKQKRAEELKEKGQDIQIWDEKQLFTALGLDEQPPF
Sequences:
>Translated_467_residues MIAAYGASISLDDSTLTISYSPLLAALSKSSAQSESVDLTQVSGVSVQDPTAFTHGFLNLEGVDKSIAFAPNSSADLDAL AADIDAVLKGEKPQHLGGGALVVPSAPSTVAGLNFVGFDVETANDDWGSICQIGLVKYVDGVEESSESWLCTPPESLNFF NEINIGIHGITPEMVADQPRFADLVPKMVEFVGDLPLVAHNAQFDFTALSRACAASGIDVPEMIYGCSLTLARNEKLQVE NHKLPTVASHLGVELKNHHDAAEDARACAAITIALAKRHSFEGSFVDFVHSRGFTMGTVDNARVYPVLKDRSGANVALQR RNFGLDAGKTEVPVQPAVDPAWETPRAEPKKQSGRRAPWDKVATPEVIPDPNPDADPASILYGQNVTLTGDFEPYEKGAL WQQIADQGALIGKNVTKKTTILVAGPWATITSKQKRAEELKEKGQDIQIWDEKQLFTALGLDEQPPF >Mature_467_residues MIAAYGASISLDDSTLTISYSPLLAALSKSSAQSESVDLTQVSGVSVQDPTAFTHGFLNLEGVDKSIAFAPNSSADLDAL AADIDAVLKGEKPQHLGGGALVVPSAPSTVAGLNFVGFDVETANDDWGSICQIGLVKYVDGVEESSESWLCTPPESLNFF NEINIGIHGITPEMVADQPRFADLVPKMVEFVGDLPLVAHNAQFDFTALSRACAASGIDVPEMIYGCSLTLARNEKLQVE NHKLPTVASHLGVELKNHHDAAEDARACAAITIALAKRHSFEGSFVDFVHSRGFTMGTVDNARVYPVLKDRSGANVALQR RNFGLDAGKTEVPVQPAVDPAWETPRAEPKKQSGRRAPWDKVATPEVIPDPNPDADPASILYGQNVTLTGDFEPYEKGAL WQQIADQGALIGKNVTKKTTILVAGPWATITSKQKRAEELKEKGQDIQIWDEKQLFTALGLDEQPPF
Specific function: Required for replicative DNA synthesis. This DNA polymerase also exhibits 3' to 5' exonuclease activity [H]
COG id: COG0847
COG function: function code L; DNA polymerase III, epsilon subunit and related 3'-5' exonucleases
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 exonuclease domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011708 - InterPro: IPR006054 - InterPro: IPR006055 - InterPro: IPR013520 - InterPro: IPR012340 - InterPro: IPR016027 - InterPro: IPR004365 - InterPro: IPR004013 - InterPro: IPR003141 - InterPro: IPR006308 - InterPro: IPR012337 [H]
Pfam domain/function: PF07733 DNA_pol3_alpha; PF00929 Exonuc_X-T; PF02811 PHP; PF01336 tRNA_anti [H]
EC number: =2.7.7.7 [H]
Molecular weight: Translated: 50088; Mature: 50088
Theoretical pI: Translated: 4.53; Mature: 4.53
Prosite motif: PS50172 BRCT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIAAYGASISLDDSTLTISYSPLLAALSKSSAQSESVDLTQVSGVSVQDPTAFTHGFLNL CEEEECCEEEECCCEEEEEHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCHHHCCCEEE EGVDKSIAFAPNSSADLDALAADIDAVLKGEKPQHLGGGALVVPSAPSTVAGLNFVGFDV CCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCEEEEEEE ETANDDWGSICQIGLVKYVDGVEESSESWLCTPPESLNFFNEINIGIHGITPEMVADQPR ECCCCCHHHHHHHHHHHHHCCCCCCCCCEEECCCHHCCCCEEECEEEECCCHHHHCCCCH FADLVPKMVEFVGDLPLVAHNAQFDFTALSRACAASGIDVPEMIYGCSLTLARNEKLQVE HHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHCCCCHHHHHHCCEEEEECCCEEEEC NHKLPTVASHLGVELKNHHDAAEDARACAAITIALAKRHSFEGSFVDFVHSRGFTMGTVD CCCCCHHHHHHCCEECCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCEEECCC NARVYPVLKDRSGANVALQRRNFGLDAGKTEVPVQPAVDPAWETPRAEPKKQSGRRAPWD CCEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCC KVATPEVIPDPNPDADPASILYGQNVTLTGDFEPYEKGALWQQIADQGALIGKNVTKKTT CCCCCCCCCCCCCCCCCCCEEECCCEEEECCCCCHHCCHHHHHHHHCCCEECCCCCCEEE ILVAGPWATITSKQKRAEELKEKGQDIQIWDEKQLFTALGLDEQPPF EEEECCCHHHCCHHHHHHHHHHCCCCEEEECCHHHHHHCCCCCCCCC >Mature Secondary Structure MIAAYGASISLDDSTLTISYSPLLAALSKSSAQSESVDLTQVSGVSVQDPTAFTHGFLNL CEEEECCEEEECCCEEEEEHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCHHHCCCEEE EGVDKSIAFAPNSSADLDALAADIDAVLKGEKPQHLGGGALVVPSAPSTVAGLNFVGFDV CCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCEEEEEEE ETANDDWGSICQIGLVKYVDGVEESSESWLCTPPESLNFFNEINIGIHGITPEMVADQPR ECCCCCHHHHHHHHHHHHHCCCCCCCCCEEECCCHHCCCCEEECEEEECCCHHHHCCCCH FADLVPKMVEFVGDLPLVAHNAQFDFTALSRACAASGIDVPEMIYGCSLTLARNEKLQVE HHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHCCCCHHHHHHCCEEEEECCCEEEEC NHKLPTVASHLGVELKNHHDAAEDARACAAITIALAKRHSFEGSFVDFVHSRGFTMGTVD CCCCCHHHHHHCCEECCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCEEECCC NARVYPVLKDRSGANVALQRRNFGLDAGKTEVPVQPAVDPAWETPRAEPKKQSGRRAPWD CCEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCC KVATPEVIPDPNPDADPASILYGQNVTLTGDFEPYEKGALWQQIADQGALIGKNVTKKTT CCCCCCCCCCCCCCCCCCCEEECCCEEEECCCCCHHCCHHHHHHHHCCCEECCCCCCEEE ILVAGPWATITSKQKRAEELKEKGQDIQIWDEKQLFTALGLDEQPPF EEEECCCHHHCCHHHHHHHHHHCCCCEEEECCHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12552129 [H]