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The map label for this gene is yrdC [C]

Identifier: 145295341

GI number: 145295341

Start: 1412165

End: 1412815

Strand: Direct

Name: yrdC [C]

Synonym: cgR_1281

Alternate gene names: 145295341

Gene position: 1412165-1412815 (Clockwise)

Preceding gene: 145295340

Following gene: 145295342

Centisome position: 42.61

GC content: 59.75

Gene sequence:

>651_bases
GTGAGCAGAATCTATGACTGTGCCGACCAAGACTCCCGTGCAGCAGGCCTAAAGGCGGCTGTCGATGCAGTCAAAGCCGG
TCAGCTCGTTGTCCTTCCCACGGATACCCTTTATGGACTCGGCTGCGACGCTTTCAACAACGAGGCAGTGGCCAACCTTC
TGGCCACCAAACACCGTGGCCCCGATATGCCCGTTCCAGTGCTCGTCGGCAGCTGGGACACCATCCAAGGCCTCGTTCAC
AGCTATTCCGCACAGGCGAAAGCCTTGGTTGAGGCATTTTGGCCAGGTGGGCTTTCCATCATCGTTCCGCAAGCACCGAG
CTTGCCCTGGAATCTTGGCGACACCCGTGGCACCGTGATGCTGCGCATGCCTCTGCACCCAGTTGCCATTGAATTGCTGC
GCCAGACCGGCCCCATGGCGGTGTCCTCCGCCAACATCTCCGGGCACACCCCGCCAAGCACTGTCTTGGAAGCACGCCAG
CAGCTCAACCAGAATGTCTCCGTCTACCTCGATGGCGGCGAATGTGCCATTGGCAAGCCATCAACCATCGTTGATATCTC
CGGCCCCGCACCGAAGATTTTGCGTGAGGGCGCCATCAGCGCAGAACGCGTTGGCGAAGTACTTGGAGTGTCGGCAGAAA
GCCTGCGCTAA

Upstream 100 bases:

>100_bases
CTTCATGATCTCACCGGCAGAGCGCGTTTTGTTACAGCGCGTAAACTGTGACTTTGAAAAATTTTTGAACAATCCGTACA
CCAACTCTAGGAGAAAAACA

Downstream 100 bases:

>100_bases
ATGGGAGTCGGTTTCGCGGGAATCCCGCTGCGCGAATTGGGATTGGTGATCCTCGTTGCAGCGGCCATCACGTATCTCAG
CACAGGCATCATCCGCACCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 216; Mature: 215

Protein sequence:

>216_residues
MSRIYDCADQDSRAAGLKAAVDAVKAGQLVVLPTDTLYGLGCDAFNNEAVANLLATKHRGPDMPVPVLVGSWDTIQGLVH
SYSAQAKALVEAFWPGGLSIIVPQAPSLPWNLGDTRGTVMLRMPLHPVAIELLRQTGPMAVSSANISGHTPPSTVLEARQ
QLNQNVSVYLDGGECAIGKPSTIVDISGPAPKILREGAISAERVGEVLGVSAESLR

Sequences:

>Translated_216_residues
MSRIYDCADQDSRAAGLKAAVDAVKAGQLVVLPTDTLYGLGCDAFNNEAVANLLATKHRGPDMPVPVLVGSWDTIQGLVH
SYSAQAKALVEAFWPGGLSIIVPQAPSLPWNLGDTRGTVMLRMPLHPVAIELLRQTGPMAVSSANISGHTPPSTVLEARQ
QLNQNVSVYLDGGECAIGKPSTIVDISGPAPKILREGAISAERVGEVLGVSAESLR
>Mature_215_residues
SRIYDCADQDSRAAGLKAAVDAVKAGQLVVLPTDTLYGLGCDAFNNEAVANLLATKHRGPDMPVPVLVGSWDTIQGLVHS
YSAQAKALVEAFWPGGLSIIVPQAPSLPWNLGDTRGTVMLRMPLHPVAIELLRQTGPMAVSSANISGHTPPSTVLEARQQ
LNQNVSVYLDGGECAIGKPSTIVDISGPAPKILREGAISAERVGEVLGVSAESLR

Specific function: Binds Preferentially To Double-Stranded RNA. [C]

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain [H]

Homologues:

Organism=Escherichia coli, GI2367210, Length=150, Percent_Identity=26, Blast_Score=68, Evalue=4e-13,
Organism=Escherichia coli, GI87081864, Length=202, Percent_Identity=26.7326732673267, Blast_Score=64, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI17537239, Length=200, Percent_Identity=27.5, Blast_Score=67, Evalue=9e-12,
Organism=Saccharomyces cerevisiae, GI6321269, Length=218, Percent_Identity=29.3577981651376, Blast_Score=88, Evalue=1e-18,
Organism=Drosophila melanogaster, GI78707274, Length=199, Percent_Identity=28.643216080402, Blast_Score=68, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017945
- InterPro:   IPR004388
- InterPro:   IPR006070 [H]

Pfam domain/function: PF01300 Sua5_yciO_yrdC [H]

EC number: NA

Molecular weight: Translated: 22641; Mature: 22510

Theoretical pI: Translated: 5.62; Mature: 5.62

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRIYDCADQDSRAAGLKAAVDAVKAGQLVVLPTDTLYGLGCDAFNNEAVANLLATKHRG
CCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCEEECCCCCCCCHHHHHHHHHHCCC
PDMPVPVLVGSWDTIQGLVHSYSAQAKALVEAFWPGGLSIIVPQAPSLPWNLGDTRGTVM
CCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCEEE
LRMPLHPVAIELLRQTGPMAVSSANISGHTPPSTVLEARQQLNQNVSVYLDGGECAIGKP
EEECCCHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCEEEEEECCEEECCCC
STIVDISGPAPKILREGAISAERVGEVLGVSAESLR
CEEEECCCCCHHHHHHCCCCHHHHHHHHCCCHHHCC
>Mature Secondary Structure 
SRIYDCADQDSRAAGLKAAVDAVKAGQLVVLPTDTLYGLGCDAFNNEAVANLLATKHRG
CCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCEEECCCCCCCCHHHHHHHHHHCCC
PDMPVPVLVGSWDTIQGLVHSYSAQAKALVEAFWPGGLSIIVPQAPSLPWNLGDTRGTVM
CCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCEEE
LRMPLHPVAIELLRQTGPMAVSSANISGHTPPSTVLEARQQLNQNVSVYLDGGECAIGKP
EEECCCHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCEEEEEECCEEECCCC
STIVDISGPAPKILREGAISAERVGEVLGVSAESLR
CEEEECCCCCHHHHHHCCCCHHHHHHHHCCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]