Click here to switch to the map view.

The map label for this gene is desR [H]

Identifier: 145295107

GI number: 145295107

Start: 1159307

End: 1159918

Strand: Direct

Name: desR [H]

Synonym: cgR_1050

Alternate gene names: 145295107

Gene position: 1159307-1159918 (Clockwise)

Preceding gene: 145295106

Following gene: 145295109

Centisome position: 34.98

GC content: 56.54

Gene sequence:

>612_bases
ATGATTTCCATTTCCATCGCCGATGACGAAGCCCTGATCGCAAGCTCTCTGGCAACTTTGCTCAGTTTGGAACCCGATTT
AGACGTCCGACTTACCGCAGGATCCGGTGAAGAACTCATTGAAATGTGGGCGGATCCAAGCAACCGAACCGATGTATGCG
TCCTTGACCTTCAACTCGGAGGCATCGACGGCGTCGACACCGCCACCCGGCTCATGGAAACCACCCCAGATTTGGCCGTG
CTCATCGTGACCAGCCACGCCAGGCCCCGACAACTCAAACGCGCGCTTGCAGCAGGTGTTTTAGGATTCTTGCCCAAAAC
ATCCACCGCAGATGAATTCGCCACCGCAATCCGCACCGTTCACGCTGGACGACGCTACATCGACCCCGAACTAGCCGCCA
TGACGATCAGCGCCGGTGAATCCCCATTAACCAACCGTGAAGAAGAAGTCCTCGAACTAGCAGGCCAAGGACTAAGCGCC
GAAGAAATTGCGGTGGCAGCGCACCTCGCGCCGGGAACCACCCGCAACTATTTATCCCAAGCTATGACAAAAGTAGGCGC
GCAGAATCGCTTTGAAGCGTTCACGCGCGCCAGGGAATTGGGCTGGTTGTAG

Upstream 100 bases:

>100_bases
AGCCGGAATGACGCTCATTGTGTCCCGCGAAGACGACCAGTTCAGCGTCCGCATGCTCATTAATGCACCTGCAAATACAC
CTGCAGAAAAGGAAGCTTAA

Downstream 100 bases:

>100_bases
CTTGTGGCTCAACTCCTATTAAAGCTGGAGCTAGAAGGAGAGAACTGCCAGAACTGTGGAGCCTACGAAAGCTGGTACGA
AAGTCTCACGTGGGAGACCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 203; Mature: 203

Protein sequence:

>203_residues
MISISIADDEALIASSLATLLSLEPDLDVRLTAGSGEELIEMWADPSNRTDVCVLDLQLGGIDGVDTATRLMETTPDLAV
LIVTSHARPRQLKRALAAGVLGFLPKTSTADEFATAIRTVHAGRRYIDPELAAMTISAGESPLTNREEEVLELAGQGLSA
EEIAVAAHLAPGTTRNYLSQAMTKVGAQNRFEAFTRARELGWL

Sequences:

>Translated_203_residues
MISISIADDEALIASSLATLLSLEPDLDVRLTAGSGEELIEMWADPSNRTDVCVLDLQLGGIDGVDTATRLMETTPDLAV
LIVTSHARPRQLKRALAAGVLGFLPKTSTADEFATAIRTVHAGRRYIDPELAAMTISAGESPLTNREEEVLELAGQGLSA
EEIAVAAHLAPGTTRNYLSQAMTKVGAQNRFEAFTRARELGWL
>Mature_203_residues
MISISIADDEALIASSLATLLSLEPDLDVRLTAGSGEELIEMWADPSNRTDVCVLDLQLGGIDGVDTATRLMETTPDLAV
LIVTSHARPRQLKRALAAGVLGFLPKTSTADEFATAIRTVHAGRRYIDPELAAMTISAGESPLTNREEEVLELAGQGLSA
EEIAVAAHLAPGTTRNYLSQAMTKVGAQNRFEAFTRARELGWL

Specific function: Member of the two-component regulatory system desR/desK, responsible for cold induction of the des gene coding for the Delta5 acyl-lipid desaturase [H]

COG id: COG2197

COG function: function code TK; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1790102, Length=202, Percent_Identity=34.1584158415842, Blast_Score=115, Evalue=2e-27,
Organism=Escherichia coli, GI1788222, Length=201, Percent_Identity=26.865671641791, Blast_Score=84, Evalue=5e-18,
Organism=Escherichia coli, GI1788521, Length=202, Percent_Identity=27.7227722772277, Blast_Score=62, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR016032
- InterPro:   IPR001789
- InterPro:   IPR011990
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 21700; Mature: 21700

Theoretical pI: Translated: 4.38; Mature: 4.38

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISISIADDEALIASSLATLLSLEPDLDVRLTAGSGEELIEMWADPSNRTDVCVLDLQLG
CEEEEECCCHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHCCCCCCCCEEEEEEEEC
GIDGVDTATRLMETTPDLAVLIVTSHARPRQLKRALAAGVLGFLPKTSTADEFATAIRTV
CCCCHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
HAGRRYIDPELAAMTISAGESPLTNREEEVLELAGQGLSAEEIAVAAHLAPGTTRNYLSQ
HHCCCCCCCHHHEEEECCCCCCCCCHHHHHHHHHCCCCCHHHHHEEEECCCCCHHHHHHH
AMTKVGAQNRFEAFTRARELGWL
HHHHHCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MISISIADDEALIASSLATLLSLEPDLDVRLTAGSGEELIEMWADPSNRTDVCVLDLQLG
CEEEEECCCHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHCCCCCCCCEEEEEEEEC
GIDGVDTATRLMETTPDLAVLIVTSHARPRQLKRALAAGVLGFLPKTSTADEFATAIRTV
CCCCHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
HAGRRYIDPELAAMTISAGESPLTNREEEVLELAGQGLSAEEIAVAAHLAPGTTRNYLSQ
HHCCCCCCCHHHEEEECCCCCCCCCHHHHHHHHHCCCCCHHHHHEEEECCCCCHHHHHHH
AMTKVGAQNRFEAFTRARELGWL
HHHHHCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]