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The map label for this gene is yabD [H]

Identifier: 145295066

GI number: 145295066

Start: 1115939

End: 1116862

Strand: Direct

Name: yabD [H]

Synonym: cgR_1009

Alternate gene names: 145295066

Gene position: 1115939-1116862 (Clockwise)

Preceding gene: 145295064

Following gene: 145295067

Centisome position: 33.67

GC content: 53.35

Gene sequence:

>924_bases
TTGATCTGGGTCCCCAGGGTAGTGGGGTTGCCCTGGGTTAAAGACGTGGGAGAGATCAATGATCTGCATGGGTCTAGAAT
AAAGGCCACTATGTCTAAGAAGAAGCCTCGCCCCATTCCGGTTCCTGCTCAATTTATCCCTGGTCTCATTGATGCGCATA
CACATTTGGCATCGTGTGGAGGAGATCTTGCAGGGTTGGTGGAAAGGGCCAAGGAGGCGGGCGTCGAAAAGCTTTGTACC
GTCGGTGATGGTTTGGCTGAGGCCGAGCTGGCGCTGGAGGCCGCGCAACAGTTTGGCAATGTGTTTGCTGCGTGTGCGAT
TCATCCAACTAAGGCTGATCAGTTGGATGGGGCTGCGCGTGCGCGGCTGACGCAGATGGCGGCGGATCCAAATTGTGTGG
CCATTGGCGAGACTGGTTTGGATTCGTATTGGATCAAGCACGATCCAGAGGACACGGCGGCGTTGGATGTGCAAGAGGAG
GCGCTGCGCTGGCATATTGATTTGGCAATTAGTGCGGATAAGCCGTTGATGATTCACAATCGTGAGGCGGATGCTGATTT
GATGCGAGTGTTGGCGGATGCTCCACCTCCAAAAGATACGATTCTGCATTGTTTTTCTTCGCCATTGGACGTGGCGAAGG
AAGCGTTGGATCGTGGATATGTGTTGAGTTTTGCGGGCAATGTGACGTTTAAGCGTAATGAGGAGTTGCGGGAGGCTGCT
CGTCTTGCGCCGATTTCCCAAATTCTGATTGAAACTGATGCGCCATATATGACGCCGGAGCCGTTTCGGGGGAGTAGGAA
TGAGCCGTCGTTGATTGGTCATACGGCGCTCTGTATCGCGGAGGTTCGGGGGATGGCTGTGGAGGATGTTGCGGCGGCTT
TGAATGAGAATTTTGATCGCGTTTATGGGGTCACAAATCTATAA

Upstream 100 bases:

>100_bases
AATGTGCAGGTGCATCTACATGCGTTCCCCAGGGACCAGCAAGTCTGTATTGATGCATTAAAAAGCCATCGTTTTCAATC
GTGGAGACCGTCTTAATTTC

Downstream 100 bases:

>100_bases
CGTGAGGTAGCTCACAGTCAATCTGTTGGCCGTGGTCAGCCGTGGGGGTTGTGGTGGGTGTGACTGAAGTTTATGAAGTT
GCACGCCACGGCGGTTTGGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 307; Mature: 307

Protein sequence:

>307_residues
MIWVPRVVGLPWVKDVGEINDLHGSRIKATMSKKKPRPIPVPAQFIPGLIDAHTHLASCGGDLAGLVERAKEAGVEKLCT
VGDGLAEAELALEAAQQFGNVFAACAIHPTKADQLDGAARARLTQMAADPNCVAIGETGLDSYWIKHDPEDTAALDVQEE
ALRWHIDLAISADKPLMIHNREADADLMRVLADAPPPKDTILHCFSSPLDVAKEALDRGYVLSFAGNVTFKRNEELREAA
RLAPISQILIETDAPYMTPEPFRGSRNEPSLIGHTALCIAEVRGMAVEDVAAALNENFDRVYGVTNL

Sequences:

>Translated_307_residues
MIWVPRVVGLPWVKDVGEINDLHGSRIKATMSKKKPRPIPVPAQFIPGLIDAHTHLASCGGDLAGLVERAKEAGVEKLCT
VGDGLAEAELALEAAQQFGNVFAACAIHPTKADQLDGAARARLTQMAADPNCVAIGETGLDSYWIKHDPEDTAALDVQEE
ALRWHIDLAISADKPLMIHNREADADLMRVLADAPPPKDTILHCFSSPLDVAKEALDRGYVLSFAGNVTFKRNEELREAA
RLAPISQILIETDAPYMTPEPFRGSRNEPSLIGHTALCIAEVRGMAVEDVAAALNENFDRVYGVTNL
>Mature_307_residues
MIWVPRVVGLPWVKDVGEINDLHGSRIKATMSKKKPRPIPVPAQFIPGLIDAHTHLASCGGDLAGLVERAKEAGVEKLCT
VGDGLAEAELALEAAQQFGNVFAACAIHPTKADQLDGAARARLTQMAADPNCVAIGETGLDSYWIKHDPEDTAALDVQEE
ALRWHIDLAISADKPLMIHNREADADLMRVLADAPPPKDTILHCFSSPLDVAKEALDRGYVLSFAGNVTFKRNEELREAA
RLAPISQILIETDAPYMTPEPFRGSRNEPSLIGHTALCIAEVRGMAVEDVAAALNENFDRVYGVTNL

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI225903424, Length=210, Percent_Identity=33.8095238095238, Blast_Score=99, Evalue=5e-21,
Organism=Homo sapiens, GI110349730, Length=269, Percent_Identity=28.2527881040892, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI110349734, Length=269, Percent_Identity=28.2527881040892, Blast_Score=79, Evalue=5e-15,
Organism=Homo sapiens, GI226061853, Length=277, Percent_Identity=27.7978339350181, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI226061614, Length=262, Percent_Identity=26.7175572519084, Blast_Score=75, Evalue=7e-14,
Organism=Homo sapiens, GI14042943, Length=202, Percent_Identity=26.7326732673267, Blast_Score=69, Evalue=4e-12,
Organism=Escherichia coli, GI1787342, Length=262, Percent_Identity=33.206106870229, Blast_Score=149, Evalue=2e-37,
Organism=Escherichia coli, GI48994985, Length=248, Percent_Identity=31.8548387096774, Blast_Score=108, Evalue=3e-25,
Organism=Escherichia coli, GI87082439, Length=260, Percent_Identity=26.9230769230769, Blast_Score=97, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI17559024, Length=284, Percent_Identity=27.8169014084507, Blast_Score=111, Evalue=5e-25,
Organism=Caenorhabditis elegans, GI71980746, Length=262, Percent_Identity=26.3358778625954, Blast_Score=108, Evalue=3e-24,
Organism=Caenorhabditis elegans, GI17565396, Length=193, Percent_Identity=31.0880829015544, Blast_Score=74, Evalue=7e-14,
Organism=Caenorhabditis elegans, GI17543026, Length=184, Percent_Identity=28.2608695652174, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI24648690, Length=208, Percent_Identity=31.25, Blast_Score=90, Evalue=2e-18,
Organism=Drosophila melanogaster, GI24586117, Length=278, Percent_Identity=24.4604316546763, Blast_Score=68, Evalue=9e-12,
Organism=Drosophila melanogaster, GI221330018, Length=278, Percent_Identity=24.4604316546763, Blast_Score=67, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278
- InterPro:   IPR015991 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.-

Molecular weight: Translated: 33208; Mature: 33208

Theoretical pI: Translated: 4.81; Mature: 4.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIWVPRVVGLPWVKDVGEINDLHGSRIKATMSKKKPRPIPVPAQFIPGLIDAHTHLASCG
CEECCCCCCCCCHHHHHHHHHCCCCCEEHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCC
GDLAGLVERAKEAGVEKLCTVGDGLAEAELALEAAQQFGNVFAACAIHPTKADQLDGAAR
CHHHHHHHHHHHHCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHEEECCCCCHHCCHHHH
ARLTQMAADPNCVAIGETGLDSYWIKHDPEDTAALDVQEEALRWHIDLAISADKPLMIHN
HHHHHHCCCCCEEEECCCCCCCCCCCCCCCCHHHCCHHHHHHEEEEEEEEECCCCEEEEC
READADLMRVLADAPPPKDTILHCFSSPLDVAKEALDRGYVLSFAGNVTFKRNEELREAA
CCCCHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHHHCCCEEEEEECCEEECCCHHHHHHH
RLAPISQILIETDAPYMTPEPFRGSRNEPSLIGHTALCIAEVRGMAVEDVAAALNENFDR
HHCHHHHHHEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHCCHHH
VYGVTNL
HCCCCCC
>Mature Secondary Structure
MIWVPRVVGLPWVKDVGEINDLHGSRIKATMSKKKPRPIPVPAQFIPGLIDAHTHLASCG
CEECCCCCCCCCHHHHHHHHHCCCCCEEHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCC
GDLAGLVERAKEAGVEKLCTVGDGLAEAELALEAAQQFGNVFAACAIHPTKADQLDGAAR
CHHHHHHHHHHHHCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHEEECCCCCHHCCHHHH
ARLTQMAADPNCVAIGETGLDSYWIKHDPEDTAALDVQEEALRWHIDLAISADKPLMIHN
HHHHHHCCCCCEEEECCCCCCCCCCCCCCCCHHHCCHHHHHHEEEEEEEEECCCCEEEEC
READADLMRVLADAPPPKDTILHCFSSPLDVAKEALDRGYVLSFAGNVTFKRNEELREAA
CCCCHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHHHCCCEEEEEECCEEECCCHHHHHHH
RLAPISQILIETDAPYMTPEPFRGSRNEPSLIGHTALCIAEVRGMAVEDVAAALNENFDR
HHCHHHHHHEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHCCHHH
VYGVTNL
HCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]