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The map label for this gene is yjfH [C]

Identifier: 145294994

GI number: 145294994

Start: 1037764

End: 1038594

Strand: Direct

Name: yjfH [C]

Synonym: cgR_0939

Alternate gene names: 145294994

Gene position: 1037764-1038594 (Clockwise)

Preceding gene: 145294993

Following gene: 145294998

Centisome position: 31.31

GC content: 58.36

Gene sequence:

>831_bases
ATGACAACGCGCACGGTAATTTCTGATCCCGCAGATCCTCGTCTGGATGATGTCCGCGATCTTAACCATTCCGATTCCCG
GCCAGACCTACCCGGTGGCAAAGGCCTTGTTGTTGCCGAAGGTCCGTTGGTGGTTGGTCGGCTTCTGGAATCGCGTTACC
CAGTGCGTGCGATCGTCGGGTTTAAAAACAAGCTGGATTCTTTCCTCGACAGCATCGATGCATCCCTCGTTGAAGGCATC
CCAGTGTATGAGGTATCCCGCGAGCTCCTCGCAGAGGTCGCAGGTTTTGATATGCACCGCGGACTTCTGGCGACAGCTGA
TCGCACCGAGGAAGCAAGTGTTGCGCAGGTTCTAGAAAACGCCCGCACCGTGGTGGTGCTGGAAGGCGTAGGCGATCACG
AAAACATCGGATCCATGTTCCGCAACGCAGCAGGCATGGGCGTTGACGCCATCTTGTTCGGCAACGGTTGTGCCGATCCT
TTGTATCGACGTGTCGTTCGAGTCTCAATGGGCCACGTGCTCCGCCTGCCGTTCGCACACTTGGAAGGCACCTACACCAC
GTGGCAGCGCAGCTTAGAGCAGCTCAAAGAAGCCGGATTCCACCTCGTTTCACTCACCCCAGATCCAGAGGCGGAACACC
TCGAAGATGCGCTCGCAGGCAAAGACAAAGTGGCTCTACTCGTGGGCGCTGAAGGCCCAGGCCTGACCGAGCATGCGATG
CGCGCCACCGATGTCCGCGCCCGCATCCCGATGGCGCCGGGTACCGATAGCTTGAACCTGGCTACCTCGGCGGCGATTGC
GTTTTATGAACGGGATCGCTCACAGCGTTAA

Upstream 100 bases:

>100_bases
CGGCAGGCAAAGCTAAGCAAGTGCACTGGCTGATGTGGCTGGTCGCTGGACTCTTCGTCGTGTTCTTCGCGATTGATCCC
ATCATGGAAGCTGTCGGCTA

Downstream 100 bases:

>100_bases
GTAACAGCGCTAAGTAGTAGCGCTAGCGGTCAGTGTGGCGGAGTCTTTCCGCCATGTTTGACCCGAATTCGCGGCTGGCT
CGCCACAGAGATTTACCAAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 276; Mature: 275

Protein sequence:

>276_residues
MTTRTVISDPADPRLDDVRDLNHSDSRPDLPGGKGLVVAEGPLVVGRLLESRYPVRAIVGFKNKLDSFLDSIDASLVEGI
PVYEVSRELLAEVAGFDMHRGLLATADRTEEASVAQVLENARTVVVLEGVGDHENIGSMFRNAAGMGVDAILFGNGCADP
LYRRVVRVSMGHVLRLPFAHLEGTYTTWQRSLEQLKEAGFHLVSLTPDPEAEHLEDALAGKDKVALLVGAEGPGLTEHAM
RATDVRARIPMAPGTDSLNLATSAAIAFYERDRSQR

Sequences:

>Translated_276_residues
MTTRTVISDPADPRLDDVRDLNHSDSRPDLPGGKGLVVAEGPLVVGRLLESRYPVRAIVGFKNKLDSFLDSIDASLVEGI
PVYEVSRELLAEVAGFDMHRGLLATADRTEEASVAQVLENARTVVVLEGVGDHENIGSMFRNAAGMGVDAILFGNGCADP
LYRRVVRVSMGHVLRLPFAHLEGTYTTWQRSLEQLKEAGFHLVSLTPDPEAEHLEDALAGKDKVALLVGAEGPGLTEHAM
RATDVRARIPMAPGTDSLNLATSAAIAFYERDRSQR
>Mature_275_residues
TTRTVISDPADPRLDDVRDLNHSDSRPDLPGGKGLVVAEGPLVVGRLLESRYPVRAIVGFKNKLDSFLDSIDASLVEGIP
VYEVSRELLAEVAGFDMHRGLLATADRTEEASVAQVLENARTVVVLEGVGDHENIGSMFRNAAGMGVDAILFGNGCADPL
YRRVVRVSMGHVLRLPFAHLEGTYTTWQRSLEQLKEAGFHLVSLTPDPEAEHLEDALAGKDKVALLVGAEGPGLTEHAMR
ATDVRARIPMAPGTDSLNLATSAAIAFYERDRSQR

Specific function: Unknown

COG id: COG0566

COG function: function code J; rRNA methylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001537 [H]

Pfam domain/function: PF00588 SpoU_methylase [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 29861; Mature: 29730

Theoretical pI: Translated: 4.95; Mature: 4.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTRTVISDPADPRLDDVRDLNHSDSRPDLPGGKGLVVAEGPLVVGRLLESRYPVRAIVG
CCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHCCCCEEEEHH
FKNKLDSFLDSIDASLVEGIPVYEVSRELLAEVAGFDMHRGLLATADRTEEASVAQVLEN
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHCCEEECCCCCCHHHHHHHHHC
ARTVVVLEGVGDHENIGSMFRNAAGMGVDAILFGNGCADPLYRRVVRVSMGHVLRLPFAH
CCEEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCHHH
LEGTYTTWQRSLEQLKEAGFHLVSLTPDPEAEHLEDALAGKDKVALLVGAEGPGLTEHAM
HCCCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHCCCCCEEEEEECCCCCHHHHHH
RATDVRARIPMAPGTDSLNLATSAAIAFYERDRSQR
HHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
TTRTVISDPADPRLDDVRDLNHSDSRPDLPGGKGLVVAEGPLVVGRLLESRYPVRAIVG
CCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHCCCCEEEEHH
FKNKLDSFLDSIDASLVEGIPVYEVSRELLAEVAGFDMHRGLLATADRTEEASVAQVLEN
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHCCEEECCCCCCHHHHHHHHHC
ARTVVVLEGVGDHENIGSMFRNAAGMGVDAILFGNGCADPLYRRVVRVSMGHVLRLPFAH
CCEEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCHHH
LEGTYTTWQRSLEQLKEAGFHLVSLTPDPEAEHLEDALAGKDKVALLVGAEGPGLTEHAM
HCCCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHCCCCCEEEEEECCCCCHHHHHH
RATDVRARIPMAPGTDSLNLATSAAIAFYERDRSQR
HHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]