| Definition | Corynebacterium glutamicum R chromosome, complete genome. |
|---|---|
| Accession | NC_009342 |
| Length | 3,314,179 |
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The map label for this gene is rfbC [H]
Identifier: 145294461
GI number: 145294461
Start: 453826
End: 455178
Strand: Reverse
Name: rfbC [H]
Synonym: cgR_0416
Alternate gene names: 145294461
Gene position: 455178-453826 (Counterclockwise)
Preceding gene: 145294462
Following gene: 145294460
Centisome position: 13.73
GC content: 59.5
Gene sequence:
>1353_bases ATGTTTAACAAAGAACTCACCTCGCGCGACACCGACATCGAAGGTCTGCTGGTTTTCGATTTCCCCGTCCACGGCGACAA CCGCGGCTGGTTCAAGGAAAATTGGCAGCGCACCAAGATGACCAACCTGGGTCTGCCTGATTTCGGCCCCGTCCAAAACA ACATGAGCTACAACGCCACCGCCGGCACCACTCGCGGTATGCACGCTGAGCCGTGGGATAAATTTGTGTCCGTCGCGGTG GGTTCCGTTTTCGGAGCTTGGGTGGATCTGCGCGCGGGCTCGAGCACGTACGGTAACGTCGTAACGCAAAAAATTACCCC TGACGTGGGAGTTTACGTCCCGCGTGGTGTGGCAAACGGCTTCCAGGCGCTCGAGGACGGCACGCTGTACACCTACCTCG TCAACGATCATTGGTCCCCCGACGCGCATTACGCCAACGTCAACCTCAACATGATCGACTGGCCGCTGCCCATCACCGAG ATCTCCGAAAAAGATAAAAAACATCCCACGCTTGATCACGCCACCCCCCTGCCCGCCCGCCAGGTTCTAGTGGTCGGCGC CGGCGGACAACTGGGAACCGCGCTACGCGCGCAGTTCCCAGACGCGGAATTTGTCACGCGCGAGGAACTCGATATCACCT CAGATCTCACCGGGGCTCGTGCCTGGAAGCAGTACTCCACCATCATCAACGCCGCCGCCTACACTGCCGTTGACCAGGCA GAACACGACCGCGCAGCGGCGTGGGCGATCAATGCCACTGCCGTGGCGAACTTGGCGACCATCGCGCGCGAAAACAACCT CACCCTCGTGCACGTGTCCTCAGATTATGTCTTCGACGGTGCGGCCGAATCCTACGATGAAAACGCACCATTTTCCCCGC TGGGTGTTTATGGACAGTCCAAAGCAGCCGGCGATATTGCAGCTGCGACCGCACCGCGCCACTACATTGTGCGCACCAGC TGGGTCATTGGCGATGGCAATAATTTTGTCCGCACCATGAAATCCCTCGACGAACGCGGCATCGCACCTTCGGTTGTCGA CGACCAAATCGGCCGCCTAACCTTCACCGAAGACATCGCAGCCGGCATCGCGCACCTTTTGGAAGTGGGTGCAGCATATG GCACCTACAACCTCACCAACACCGGCGAACCCGCAAGCTGGGCCGATGTTGCCCGCGCAGTGTTCTCCGACCCCAGCAAG GTCACCGGAGTGAGCACCGCGGAGTACTTCGCCGACAAAGACGCAGCACCCCGCCCACTGCGCTCCGTGCTGAATCTAGG CAAGATCGAAGCAACAGGATTTAGCGCACCCACCTGGCAAACCCGCCTCAACAACTACCTCAAGGAGCTGTAA
Upstream 100 bases:
>100_bases AAGGCCTAGAGCAGACCATCGATTGGTACCGCGAAAACGAGGCCTGGTGGCGCGGCACCAAGGACAACGTCGAAGCAACC TACGCAAAGCAAGGCCAATA
Downstream 100 bases:
>100_bases ATGAAAGGCATCATCCTCGCAGGCGGCTCCGGCACCCGGCTCTACCCCATCACCAAGGGCATCTCCAAGCAACTCATGCC CATCTACGACAAGCCGATGG
Product: hypothetical protein
Products: NA
Alternate protein names: Thymidine diphospho-4-keto-rhamnose 3,5-epimerase; dTDP-4-keto-6-deoxyglucose 3,5-epimerase; dTDP-6-deoxy-D-xylo-4-hexulose 3,5-epimerase; dTDP-L-rhamnose synthase [H]
Number of amino acids: Translated: 450; Mature: 450
Protein sequence:
>450_residues MFNKELTSRDTDIEGLLVFDFPVHGDNRGWFKENWQRTKMTNLGLPDFGPVQNNMSYNATAGTTRGMHAEPWDKFVSVAV GSVFGAWVDLRAGSSTYGNVVTQKITPDVGVYVPRGVANGFQALEDGTLYTYLVNDHWSPDAHYANVNLNMIDWPLPITE ISEKDKKHPTLDHATPLPARQVLVVGAGGQLGTALRAQFPDAEFVTREELDITSDLTGARAWKQYSTIINAAAYTAVDQA EHDRAAAWAINATAVANLATIARENNLTLVHVSSDYVFDGAAESYDENAPFSPLGVYGQSKAAGDIAAATAPRHYIVRTS WVIGDGNNFVRTMKSLDERGIAPSVVDDQIGRLTFTEDIAAGIAHLLEVGAAYGTYNLTNTGEPASWADVARAVFSDPSK VTGVSTAEYFADKDAAPRPLRSVLNLGKIEATGFSAPTWQTRLNNYLKEL
Sequences:
>Translated_450_residues MFNKELTSRDTDIEGLLVFDFPVHGDNRGWFKENWQRTKMTNLGLPDFGPVQNNMSYNATAGTTRGMHAEPWDKFVSVAV GSVFGAWVDLRAGSSTYGNVVTQKITPDVGVYVPRGVANGFQALEDGTLYTYLVNDHWSPDAHYANVNLNMIDWPLPITE ISEKDKKHPTLDHATPLPARQVLVVGAGGQLGTALRAQFPDAEFVTREELDITSDLTGARAWKQYSTIINAAAYTAVDQA EHDRAAAWAINATAVANLATIARENNLTLVHVSSDYVFDGAAESYDENAPFSPLGVYGQSKAAGDIAAATAPRHYIVRTS WVIGDGNNFVRTMKSLDERGIAPSVVDDQIGRLTFTEDIAAGIAHLLEVGAAYGTYNLTNTGEPASWADVARAVFSDPSK VTGVSTAEYFADKDAAPRPLRSVLNLGKIEATGFSAPTWQTRLNNYLKEL >Mature_450_residues MFNKELTSRDTDIEGLLVFDFPVHGDNRGWFKENWQRTKMTNLGLPDFGPVQNNMSYNATAGTTRGMHAEPWDKFVSVAV GSVFGAWVDLRAGSSTYGNVVTQKITPDVGVYVPRGVANGFQALEDGTLYTYLVNDHWSPDAHYANVNLNMIDWPLPITE ISEKDKKHPTLDHATPLPARQVLVVGAGGQLGTALRAQFPDAEFVTREELDITSDLTGARAWKQYSTIINAAAYTAVDQA EHDRAAAWAINATAVANLATIARENNLTLVHVSSDYVFDGAAESYDENAPFSPLGVYGQSKAAGDIAAATAPRHYIVRTS WVIGDGNNFVRTMKSLDERGIAPSVVDDQIGRLTFTEDIAAGIAHLLEVGAAYGTYNLTNTGEPASWADVARAVFSDPSK VTGVSTAEYFADKDAAPRPLRSVLNLGKIEATGFSAPTWQTRLNNYLKEL
Specific function: Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4- hexulose [H]
COG id: COG1091
COG function: function code M; dTDP-4-dehydrorhamnose reductase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family [H]
Homologues:
Organism=Escherichia coli, GI1788352, Length=295, Percent_Identity=33.5593220338983, Blast_Score=112, Evalue=3e-26, Organism=Escherichia coli, GI1788350, Length=178, Percent_Identity=31.4606741573034, Blast_Score=72, Evalue=5e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011051 - InterPro: IPR000888 - InterPro: IPR014710 - ProDom: PD001462 [H]
Pfam domain/function: PF00908 dTDP_sugar_isom [H]
EC number: =5.1.3.13 [H]
Molecular weight: Translated: 48894; Mature: 48894
Theoretical pI: Translated: 4.80; Mature: 4.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFNKELTSRDTDIEGLLVFDFPVHGDNRGWFKENWQRTKMTNLGLPDFGPVQNNMSYNAT CCCCCCCCCCCCCCEEEEEEEEEECCCCCCHHHCCCHHHHCCCCCCCCCCCCCCCCCCCC AGTTRGMHAEPWDKFVSVAVGSVFGAWVDLRAGSSTYGNVVTQKITPDVGVYVPRGVANG CCCCCCCCCCHHHHHHHHHHHHHHHHHEEEECCCCCCCCEEEEECCCCCCEEECCCHHHH FQALEDGTLYTYLVNDHWSPDAHYANVNLNMIDWPLPITEISEKDKKHPTLDHATPLPAR HHHHCCCEEEEEEECCCCCCCCEEEEEEEEEEECCCCHHHHHHHHCCCCCCCCCCCCCCC QVLVVGAGGQLGTALRAQFPDAEFVTREELDITSDLTGARAWKQYSTIINAAAYTAVDQA EEEEEECCCCCCHHHHHCCCCCHHCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH EHDRAAAWAINATAVANLATIARENNLTLVHVSSDYVFDGAAESYDENAPFSPLGVYGQS CCCCCEEEEECHHHHHHHHHHHCCCCEEEEEECCCEEECCCHHCCCCCCCCCCCCCCCCC KAAGDIAAATAPRHYIVRTSWVIGDGNNFVRTMKSLDERGIAPSVVDDQIGRLTFTEDIA CCCCCHHHCCCCCEEEEEEEEEEECCHHHHHHHHHHHHCCCCCCHHHHCCCCEEEHHHHH AGIAHLLEVGAAYGTYNLTNTGEPASWADVARAVFSDPSKVTGVSTAEYFADKDAAPRPL HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCHHH RSVLNLGKIEATGFSAPTWQTRLNNYLKEL HHHHCCCCEEECCCCCCHHHHHHHHHHHHC >Mature Secondary Structure MFNKELTSRDTDIEGLLVFDFPVHGDNRGWFKENWQRTKMTNLGLPDFGPVQNNMSYNAT CCCCCCCCCCCCCCEEEEEEEEEECCCCCCHHHCCCHHHHCCCCCCCCCCCCCCCCCCCC AGTTRGMHAEPWDKFVSVAVGSVFGAWVDLRAGSSTYGNVVTQKITPDVGVYVPRGVANG CCCCCCCCCCHHHHHHHHHHHHHHHHHEEEECCCCCCCCEEEEECCCCCCEEECCCHHHH FQALEDGTLYTYLVNDHWSPDAHYANVNLNMIDWPLPITEISEKDKKHPTLDHATPLPAR HHHHCCCEEEEEEECCCCCCCCEEEEEEEEEEECCCCHHHHHHHHCCCCCCCCCCCCCCC QVLVVGAGGQLGTALRAQFPDAEFVTREELDITSDLTGARAWKQYSTIINAAAYTAVDQA EEEEEECCCCCCHHHHHCCCCCHHCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH EHDRAAAWAINATAVANLATIARENNLTLVHVSSDYVFDGAAESYDENAPFSPLGVYGQS CCCCCEEEEECHHHHHHHHHHHCCCCEEEEEECCCEEECCCHHCCCCCCCCCCCCCCCCC KAAGDIAAATAPRHYIVRTSWVIGDGNNFVRTMKSLDERGIAPSVVDDQIGRLTFTEDIA CCCCCHHHCCCCCEEEEEEEEEEECCHHHHHHHHHHHHCCCCCCHHHHCCCCEEEHHHHH AGIAHLLEVGAAYGTYNLTNTGEPASWADVARAVFSDPSKVTGVSTAEYFADKDAAPRPL HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCHHH RSVLNLGKIEATGFSAPTWQTRLNNYLKEL HHHHCCCCEEECCCCCCHHHHHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA