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The map label for this gene is rlmH [H]

Identifier: 138897037

GI number: 138897037

Start: 3515616

End: 3515906

Strand: Reverse

Name: rlmH [H]

Synonym: GTNG_3408

Alternate gene names: 138897037

Gene position: 3515906-3515616 (Counterclockwise)

Preceding gene: 138897039

Following gene: 138897036

Centisome position: 99.03

GC content: 46.05

Gene sequence:

>291_bases
TTGGCGAAAATTCCACACGATGCCCATGTTATTGCGCTTGCCATTGAAGGGAAAATGAAATCGTCCGAACAATTCGCCGC
TCGCCTCGATGAGCTTGCCACTTATGGAAAAAGCAAAGTGGTTTTTGTCATTGGGGGATCTCTTGGCTTAAGCAAACAAG
TGATGGCTCGTGCTGACGAGGCGTTGTCGTTTTCCAAAATGACTTTCCCACACCAACTCATGCGCCTTATTTTGCTTGAG
CAAATTTATCGTGCGTTTCGGATTAACCGAGGGGAACCGTATCATAAGTAA

Upstream 100 bases:

>100_bases
CGCCAAAATAGAAATCATCGAAGTCGCTGATGAAAAAACCCCTGAGCGGGCTAGCGAACTCGAGGAAGAACAAATTAAAC
AGCGCGAGGGTGAGCGGCTG

Downstream 100 bases:

>100_bases
ATGGTTTTTTAGGAACCAACAAGGAAAGAACCGAATCATAAATAAATGATTTTTCAATTTACTCCACTCGGAAAGATACC
AATGGATTTTTTAGGACAAA

Product: putative cytoplasmic protein

Products: NA

Alternate protein names: 23S rRNA m3Psi1915 methyltransferase; rRNA (pseudouridine-N3-)-methyltransferase rlmH [H]

Number of amino acids: Translated: 96; Mature: 95

Protein sequence:

>96_residues
MAKIPHDAHVIALAIEGKMKSSEQFAARLDELATYGKSKVVFVIGGSLGLSKQVMARADEALSFSKMTFPHQLMRLILLE
QIYRAFRINRGEPYHK

Sequences:

>Translated_96_residues
MAKIPHDAHVIALAIEGKMKSSEQFAARLDELATYGKSKVVFVIGGSLGLSKQVMARADEALSFSKMTFPHQLMRLILLE
QIYRAFRINRGEPYHK
>Mature_95_residues
AKIPHDAHVIALAIEGKMKSSEQFAARLDELATYGKSKVVFVIGGSLGLSKQVMARADEALSFSKMTFPHQLMRLILLEQ
IYRAFRINRGEPYHK

Specific function: Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA [H]

COG id: COG1576

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase rlmH family [H]

Homologues:

Organism=Escherichia coli, GI1786855, Length=87, Percent_Identity=37.9310344827586, Blast_Score=69, Evalue=4e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016051
- InterPro:   IPR003742 [H]

Pfam domain/function: PF02590 SPOUT_MTase [H]

EC number: NA

Molecular weight: Translated: 10804; Mature: 10673

Theoretical pI: Translated: 10.34; Mature: 10.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.2 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKIPHDAHVIALAIEGKMKSSEQFAARLDELATYGKSKVVFVIGGSLGLSKQVMARADE
CCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHH
ALSFSKMTFPHQLMRLILLEQIYRAFRINRGEPYHK
HHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
AKIPHDAHVIALAIEGKMKSSEQFAARLDELATYGKSKVVFVIGGSLGLSKQVMARADE
CCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHH
ALSFSKMTFPHQLMRLILLEQIYRAFRINRGEPYHK
HHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA