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The map label for this gene is yhfW [H]

Identifier: 138897026

GI number: 138897026

Start: 3504454

End: 3505998

Strand: Direct

Name: yhfW [H]

Synonym: GTNG_3397

Alternate gene names: 138897026

Gene position: 3504454-3505998 (Clockwise)

Preceding gene: 138897022

Following gene: 138897027

Centisome position: 98.71

GC content: 53.98

Gene sequence:

>1545_bases
ATGCAAGGAGGCCTACGTATGTCATCCCTTCCTTCTATCGTTGAACCGTACTGGCGCGATTCTGTCTCACTTCCGTCTTT
TCCGAAGCTTGATGGAGACATTTCCGTCGATGTCGTGGTCGTCGGTGGCGGCATTTCTGGCATTACAACCGCTTATTTGC
TGGCGACGCAAGGAGCACGTGTTGCCCTTCTTGAAGCCGATCGGCTGCTCAACGGGACGACGGGCCACACGACGGCGAAA
ATTACCGCCCAGCATGATCTAGTATACGATGAGTTTCTCAACCATTTCGGCAAGGAGAAAGCGCGTCTTTATTATGACGC
CTGCATGGATGCGCTTGGCTTCATTCGCCGCACGGTTGAACAGCATGAGATCGACTGCGACTTTTGCGAACAAGACGCCT
ACATTTATACAACATCTTCCTCTTCATTTCAAAAGTTAGTGAAAGAGTGGGAGGCATATGAGCGGCTCGGTATCGACGGC
GCTTTCGTTGAGTCCATCCCGCTCCCGCTGCCGGTGAAAGCGGCGGTTGTGATGAAGCGACAAGCCCAGTTTCACCCGCT
CAAATATTTAGTCAAACTTGTCGATGCCATGACAAAGGCAGGAGTCGCGATTTACGAATACACGCCGGTCGCCGACATCG
AGCAAGGGAAGCGGCTGTCCGTCGTGACGCGCGACAAAAAGCGAGTGGAATGTGACCATGTCGCCATCTGTTCCCACTTT
CCGTTTTATGACGGCGGGTTTTACTTTTCCCGCATGTATGCTGAGCGGTCATACGTGTTAGGAGTGACGATTACTGAACC
TTATCCTGGCGGTATGTATTTAAGCGCCGATAACCCGAAGCGCTCGGTTCGTTCCGCCGCGGCGAACGGTGAGACACTTA
TTCTCATCGGCGGGGAAAACCATAAAACCGGCCAAGGGGTACCGACGATGCGACATTATGAGGCGCTTTCCTCGTTTGCC
TCGCAGCTGTTTACGGTGAAAGACATCCGTTACCGCTGGTCGGCCCAAGACTTGACGACGCTTGATAAAATGCCATATAT
TGGACCGATGACAGCCGATGCGCCAAACATTTATGTCGCGACAGGATACCGGAAATGGGGGATGACAAACGGGACTACCG
CAGGGATGTTGCTGTCTGACCTCATTCTCGGCCGCGACAATCAATATCGCGACTTGTACTCCCCGTCGCGTTTTTACGCT
GACCCGAGTGTGAAGCAGTTTTTCACAACAAACCTTGATGTCGCCAAACATTTATTGGCTGGCAAAATCGAGCCGGCCAT
CCGCCGGCCGCAAGACTTGGCGCGCGGGGAGGGAGCGGTCGTCTCGGTCAATGGGAAACGAGCCGGCGCCTACAAAGACG
AGAACGGGACACTTCATGTCGTCGACACGACGTGCACCCATATGGGCTGTGAACTTGAATGGAACAGCGGCGACCGGACG
TGGGACTGTCCTTGCCATGGCTCGCGCTTTTCGATCGATGGTGACGTCGTCGAAGGCCCGGCGAAGCAGCCGTTGACACG
TATTGAACTCGATGAATCGTCTTGA

Upstream 100 bases:

>100_bases
TTCATTCTCCTTGCGGACGATTGCCAAAAAAAGAAAGCGGTTGTGGATATGTGGAATAACAGGCCATGGCAAAGAGCAAA
CTACAGAAAACAATATTGGC

Downstream 100 bases:

>100_bases
TGTGCTACTTCCTGTGTATCTATACATGGGAGCGAAATGTTCTTTTTTCTTGATGAGGGGGATCGTATGTTCGTTCCCCC
TCATCATTTTCGTTTGCCGA

Product: Rieske

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 514; Mature: 514

Protein sequence:

>514_residues
MQGGLRMSSLPSIVEPYWRDSVSLPSFPKLDGDISVDVVVVGGGISGITTAYLLATQGARVALLEADRLLNGTTGHTTAK
ITAQHDLVYDEFLNHFGKEKARLYYDACMDALGFIRRTVEQHEIDCDFCEQDAYIYTTSSSSFQKLVKEWEAYERLGIDG
AFVESIPLPLPVKAAVVMKRQAQFHPLKYLVKLVDAMTKAGVAIYEYTPVADIEQGKRLSVVTRDKKRVECDHVAICSHF
PFYDGGFYFSRMYAERSYVLGVTITEPYPGGMYLSADNPKRSVRSAAANGETLILIGGENHKTGQGVPTMRHYEALSSFA
SQLFTVKDIRYRWSAQDLTTLDKMPYIGPMTADAPNIYVATGYRKWGMTNGTTAGMLLSDLILGRDNQYRDLYSPSRFYA
DPSVKQFFTTNLDVAKHLLAGKIEPAIRRPQDLARGEGAVVSVNGKRAGAYKDENGTLHVVDTTCTHMGCELEWNSGDRT
WDCPCHGSRFSIDGDVVEGPAKQPLTRIELDESS

Sequences:

>Translated_514_residues
MQGGLRMSSLPSIVEPYWRDSVSLPSFPKLDGDISVDVVVVGGGISGITTAYLLATQGARVALLEADRLLNGTTGHTTAK
ITAQHDLVYDEFLNHFGKEKARLYYDACMDALGFIRRTVEQHEIDCDFCEQDAYIYTTSSSSFQKLVKEWEAYERLGIDG
AFVESIPLPLPVKAAVVMKRQAQFHPLKYLVKLVDAMTKAGVAIYEYTPVADIEQGKRLSVVTRDKKRVECDHVAICSHF
PFYDGGFYFSRMYAERSYVLGVTITEPYPGGMYLSADNPKRSVRSAAANGETLILIGGENHKTGQGVPTMRHYEALSSFA
SQLFTVKDIRYRWSAQDLTTLDKMPYIGPMTADAPNIYVATGYRKWGMTNGTTAGMLLSDLILGRDNQYRDLYSPSRFYA
DPSVKQFFTTNLDVAKHLLAGKIEPAIRRPQDLARGEGAVVSVNGKRAGAYKDENGTLHVVDTTCTHMGCELEWNSGDRT
WDCPCHGSRFSIDGDVVEGPAKQPLTRIELDESS
>Mature_514_residues
MQGGLRMSSLPSIVEPYWRDSVSLPSFPKLDGDISVDVVVVGGGISGITTAYLLATQGARVALLEADRLLNGTTGHTTAK
ITAQHDLVYDEFLNHFGKEKARLYYDACMDALGFIRRTVEQHEIDCDFCEQDAYIYTTSSSSFQKLVKEWEAYERLGIDG
AFVESIPLPLPVKAAVVMKRQAQFHPLKYLVKLVDAMTKAGVAIYEYTPVADIEQGKRLSVVTRDKKRVECDHVAICSHF
PFYDGGFYFSRMYAERSYVLGVTITEPYPGGMYLSADNPKRSVRSAAANGETLILIGGENHKTGQGVPTMRHYEALSSFA
SQLFTVKDIRYRWSAQDLTTLDKMPYIGPMTADAPNIYVATGYRKWGMTNGTTAGMLLSDLILGRDNQYRDLYSPSRFYA
DPSVKQFFTTNLDVAKHLLAGKIEPAIRRPQDLARGEGAVVSVNGKRAGAYKDENGTLHVVDTTCTHMGCELEWNSGDRT
WDCPCHGSRFSIDGDVVEGPAKQPLTRIELDESS

Specific function: Unknown

COG id: COG0665

COG function: function code E; Glycine/D-amino acid oxidases (deaminating)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Rieske domain [H]

Homologues:

Organism=Escherichia coli, GI1787559, Length=376, Percent_Identity=25.7978723404255, Blast_Score=89, Evalue=1e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006076
- InterPro:   IPR017941
- InterPro:   IPR005805 [H]

Pfam domain/function: PF01266 DAO; PF00355 Rieske [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 57000; Mature: 57000

Theoretical pI: Translated: 6.33; Mature: 6.33

Prosite motif: PS00200 RIESKE_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQGGLRMSSLPSIVEPYWRDSVSLPSFPKLDGDISVDVVVVGGGISGITTAYLLATQGAR
CCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHCCCCCE
VALLEADRLLNGTTGHTTAKITAQHDLVYDEFLNHFGKEKARLYYDACMDALGFIRRTVE
EEEEEHHHHHCCCCCCEEEEEEECHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
QHEIDCDFCEQDAYIYTTSSSSFQKLVKEWEAYERLGIDGAFVESIPLPLPVKAAVVMKR
HHCCCCCEECCCCEEEEECCHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCHHHHHHHH
QAQFHPLKYLVKLVDAMTKAGVAIYEYTPVADIEQGKRLSVVTRDKKRVECDHVAICSHF
HCCCCHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCEEEEEECCCCCCCCCEEEEECCC
PFYDGGFYFSRMYAERSYVLGVTITEPYPGGMYLSADNPKRSVRSAAANGETLILIGGEN
CCCCCCHHHHHHHCCCEEEEEEEEECCCCCCEEEECCCHHHHHHHHHCCCCEEEEECCCC
HKTGQGVPTMRHYEALSSFASQLFTVKDIRYRWSAQDLTTLDKMPYIGPMTADAPNIYVA
CCCCCCCCHHHHHHHHHHHHHHHEEHHHHHEEECCCHHHHHHCCCCCCCCCCCCCEEEEE
TGYRKWGMTNGTTAGMLLSDLILGRDNQYRDLYSPSRFYADPSVKQFFTTNLDVAKHLLA
ECCCCCCCCCCCHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCCHHHHHHCCHHHHHHHHH
GKIEPAIRRPQDLARGEGAVVSVNGKRAGAYKDENGTLHVVDTTCTHMGCELEWNSGDRT
CCCCHHHCCCHHHHCCCCCEEEECCCCCCCEECCCCEEEEEECCCCCCCCEEEECCCCCE
WDCPCHGSRFSIDGDVVEGPAKQPLTRIELDESS
EECCCCCCEEECCCCEECCCCCCCCEEEEECCCC
>Mature Secondary Structure
MQGGLRMSSLPSIVEPYWRDSVSLPSFPKLDGDISVDVVVVGGGISGITTAYLLATQGAR
CCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHCCCCCE
VALLEADRLLNGTTGHTTAKITAQHDLVYDEFLNHFGKEKARLYYDACMDALGFIRRTVE
EEEEEHHHHHCCCCCCEEEEEEECHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
QHEIDCDFCEQDAYIYTTSSSSFQKLVKEWEAYERLGIDGAFVESIPLPLPVKAAVVMKR
HHCCCCCEECCCCEEEEECCHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCHHHHHHHH
QAQFHPLKYLVKLVDAMTKAGVAIYEYTPVADIEQGKRLSVVTRDKKRVECDHVAICSHF
HCCCCHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCEEEEEECCCCCCCCCEEEEECCC
PFYDGGFYFSRMYAERSYVLGVTITEPYPGGMYLSADNPKRSVRSAAANGETLILIGGEN
CCCCCCHHHHHHHCCCEEEEEEEEECCCCCCEEEECCCHHHHHHHHHCCCCEEEEECCCC
HKTGQGVPTMRHYEALSSFASQLFTVKDIRYRWSAQDLTTLDKMPYIGPMTADAPNIYVA
CCCCCCCCHHHHHHHHHHHHHHHEEHHHHHEEECCCHHHHHHCCCCCCCCCCCCCEEEEE
TGYRKWGMTNGTTAGMLLSDLILGRDNQYRDLYSPSRFYADPSVKQFFTTNLDVAKHLLA
ECCCCCCCCCCCHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCCHHHHHHCCHHHHHHHHH
GKIEPAIRRPQDLARGEGAVVSVNGKRAGAYKDENGTLHVVDTTCTHMGCELEWNSGDRT
CCCCHHHCCCHHHHCCCCCEEEECCCCCCCEECCCCEEEEEECCCCCCCCEEEECCCCCE
WDCPCHGSRFSIDGDVVEGPAKQPLTRIELDESS
EECCCCCCEEECCCCEECCCCCCCCEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]