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The map label for this gene is ycjD [C]

Identifier: 138896833

GI number: 138896833

Start: 3303584

End: 3304021

Strand: Direct

Name: ycjD [C]

Synonym: GTNG_3196

Alternate gene names: 138896833

Gene position: 3303584-3304021 (Clockwise)

Preceding gene: 138896832

Following gene: 138896844

Centisome position: 93.05

GC content: 50.46

Gene sequence:

>438_bases
ATGGTCATGGTCGAATATCTCGTTTTCTTCGGATTGATTGCAGCGGCTGTAGTCTTGTTTGTCCGGCACGAAATCTGGGA
GAAACGCCATCCATCTCAGTCGCTGTCGTTTGATTGGGAATATGCTAAATGCGAAAGTCCCATCGAGCGAAAATTGTATG
AGGCGCTAACGTGGAGCGGTTATAACGTGAAGGCGCAGTACGTCGTTCCACCGGCACGCTACCGGATTGATTTAGCGTTG
CCGCAATACAAAATCGCCATCGAGTGCGACGGCAGGGCGTACCATTCGACACCGGAACAAAAGCGGCACGATCAGAAAAA
AGACGCCTATTTACGACGCAAAGGCTGGAAAGTGCTCCGCTTTCCCGGCAGCGTAATTCACGCGAACGTCGGTGATGTGA
TTCAACAAATCGAAGAAGAAATCCGCCGGACAATATAG

Upstream 100 bases:

>100_bases
TTGGACGAATTACAAATAGATGCCCATAAAAAAATGCCTATTTCATGAACTTCTCGCTACGGTTACCTTCGCCCAAACGT
GTCTATCCTATGATTAGGTG

Downstream 100 bases:

>100_bases
AAAAAGGATCGGCCGGAAACAGCCCCCATGAGGGTCTGTCCACCAATGCCGATCCTTTTTCTTCATCTTCCGTTTAGACA
GAAGCATACATTCGATCAAG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 145; Mature: 145

Protein sequence:

>145_residues
MVMVEYLVFFGLIAAAVVLFVRHEIWEKRHPSQSLSFDWEYAKCESPIERKLYEALTWSGYNVKAQYVVPPARYRIDLAL
PQYKIAIECDGRAYHSTPEQKRHDQKKDAYLRRKGWKVLRFPGSVIHANVGDVIQQIEEEIRRTI

Sequences:

>Translated_145_residues
MVMVEYLVFFGLIAAAVVLFVRHEIWEKRHPSQSLSFDWEYAKCESPIERKLYEALTWSGYNVKAQYVVPPARYRIDLAL
PQYKIAIECDGRAYHSTPEQKRHDQKKDAYLRRKGWKVLRFPGSVIHANVGDVIQQIEEEIRRTI
>Mature_145_residues
MVMVEYLVFFGLIAAAVVLFVRHEIWEKRHPSQSLSFDWEYAKCESPIERKLYEALTWSGYNVKAQYVVPPARYRIDLAL
PQYKIAIECDGRAYHSTPEQKRHDQKKDAYLRRKGWKVLRFPGSVIHANVGDVIQQIEEEIRRTI

Specific function: Unknown

COG id: COG1112

COG function: function code L; Superfamily I DNA and RNA helicases and helicase subunits

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 17096; Mature: 17096

Theoretical pI: Translated: 9.28; Mature: 9.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVMVEYLVFFGLIAAAVVLFVRHEIWEKRHPSQSLSFDWEYAKCESPIERKLYEALTWSG
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCHHHHHHHHHHHCCC
YNVKAQYVVPPARYRIDLALPQYKIAIECDGRAYHSTPEQKRHDQKKDAYLRRKGWKVLR
CCEEEEEEECCCCEEEEEECCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCEEEE
FPGSVIHANVGDVIQQIEEEIRRTI
CCCCEEECCHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MVMVEYLVFFGLIAAAVVLFVRHEIWEKRHPSQSLSFDWEYAKCESPIERKLYEALTWSG
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCHHHHHHHHHHHCCC
YNVKAQYVVPPARYRIDLALPQYKIAIECDGRAYHSTPEQKRHDQKKDAYLRRKGWKVLR
CCEEEEEEECCCCEEEEEECCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCEEEE
FPGSVIHANVGDVIQQIEEEIRRTI
CCCCEEECCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA