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The map label for this gene is intD [C]

Identifier: 138896499

GI number: 138896499

Start: 2964948

End: 2966084

Strand: Direct

Name: intD [C]

Synonym: GTNG_2862

Alternate gene names: 138896499

Gene position: 2964948-2966084 (Clockwise)

Preceding gene: 138896498

Following gene: 138896500

Centisome position: 83.51

GC content: 40.72

Gene sequence:

>1137_bases
GTGGCAAGCATTCAAAAAATGAAAAACGGCCGCTGGCGTTATCGTGTGTCTTATAAGGAGAATGGGAAATACAAAACGAA
AACGAAAGGCGGTTTTCGCACCAAAAAGGAGGCGGAGCTTGCGGCCGCTGAATTGGAGAAACAGCTACACAAAGGATACG
ACATCAATGCTGGGGATCAGCTTTTCCCTGAATATATGCGGAATTGGTTCGAGCTGTACAAAAAGGGGAAACACAGTCCA
GAGCATGATAAAAATGTAGAATACTCCGTTCAGCTAGTCGAGGAATACTTTGCAGGCGTAAAGATGAAAGAACTCACAAG
GGATATGTACCAAAAGTTTATTAATGAAATAGCGGAAACGAGAACGACTGAAACCGTCAAAAAACGTCATACTTACATCA
AGGAATGCATTAAAGCTGCTATCGAAGAAGGAGTTATCATTCGCGACCCTACCTACAAAGTTGTGGTTAAAGGGAAGAAA
AAAGGGAAAGACGAGGAACTGAAATATTTAAATTATCAAGAGGCGAAACAATTAATTGCTGAAATCAAAAAAGATATGCG
CTCGAAATATATTTCGCGATATATCATTCTCTTTGCATTGGCGACTGGCGCACGTTTTTCGGAAATATTAGGGCTCACAT
GGGACTGCATTGATTTCAAAAACAGAATGGTGACGATCAACAAGACTTGGGATTATAAATTTACGAATGATTTCGCCGAT
ACGAAAACCTATTCATCGAAGCGAACCATAAAGATCGATGAAGACACCTGCAAAATATTGAAAGAACTGCGGAAAGCACA
GAATGAGGTGGCCATGAAAACCGGATTGAGGAACGAGAAAAATCTTGTTTTTGTGAACACGAAGATGGAGTTAGTGTCCA
ATAACGCTGTTAACAAAACACTAAAAACGCTGTGTAGAAAACTTGGTTTAAAAGAGGTGACGATGCATTCCTTGAGACAT
ACGCACGCTTCGATGCTGTTATACCGGAAAGCGAACATCAAATATATCTCAAAGCGTCTTGGCCATAAGGATATAGGGAT
CACATTGCAGACCTACTCGCACATTTTGGACGAGCTGGAACAAGCGGAAAATATGCTCCTCGATCAAATCATGGATGATC
TATATCATGCAAAATAG

Upstream 100 bases:

>100_bases
TATGAGGCCGCTAAAACGTACGGAATTCCCAAGGAGGTGGTGCATCTAAAAAATTTTGACCACTGAACCAAACATACATT
CTCACAGGGAGGGAGATGAC

Downstream 100 bases:

>100_bases
CCGTGCAAAATTCGTGCAAAATTTTTTCGGATTCTATCGTTTTTTTCGGGATTTCCTGAAAATGAAAAACGACCGCAAAC
GCGGTCGTATCAAGGCTTCC

Product: integrase, phage-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 378; Mature: 377

Protein sequence:

>378_residues
MASIQKMKNGRWRYRVSYKENGKYKTKTKGGFRTKKEAELAAAELEKQLHKGYDINAGDQLFPEYMRNWFELYKKGKHSP
EHDKNVEYSVQLVEEYFAGVKMKELTRDMYQKFINEIAETRTTETVKKRHTYIKECIKAAIEEGVIIRDPTYKVVVKGKK
KGKDEELKYLNYQEAKQLIAEIKKDMRSKYISRYIILFALATGARFSEILGLTWDCIDFKNRMVTINKTWDYKFTNDFAD
TKTYSSKRTIKIDEDTCKILKELRKAQNEVAMKTGLRNEKNLVFVNTKMELVSNNAVNKTLKTLCRKLGLKEVTMHSLRH
THASMLLYRKANIKYISKRLGHKDIGITLQTYSHILDELEQAENMLLDQIMDDLYHAK

Sequences:

>Translated_378_residues
MASIQKMKNGRWRYRVSYKENGKYKTKTKGGFRTKKEAELAAAELEKQLHKGYDINAGDQLFPEYMRNWFELYKKGKHSP
EHDKNVEYSVQLVEEYFAGVKMKELTRDMYQKFINEIAETRTTETVKKRHTYIKECIKAAIEEGVIIRDPTYKVVVKGKK
KGKDEELKYLNYQEAKQLIAEIKKDMRSKYISRYIILFALATGARFSEILGLTWDCIDFKNRMVTINKTWDYKFTNDFAD
TKTYSSKRTIKIDEDTCKILKELRKAQNEVAMKTGLRNEKNLVFVNTKMELVSNNAVNKTLKTLCRKLGLKEVTMHSLRH
THASMLLYRKANIKYISKRLGHKDIGITLQTYSHILDELEQAENMLLDQIMDDLYHAK
>Mature_377_residues
ASIQKMKNGRWRYRVSYKENGKYKTKTKGGFRTKKEAELAAAELEKQLHKGYDINAGDQLFPEYMRNWFELYKKGKHSPE
HDKNVEYSVQLVEEYFAGVKMKELTRDMYQKFINEIAETRTTETVKKRHTYIKECIKAAIEEGVIIRDPTYKVVVKGKKK
GKDEELKYLNYQEAKQLIAEIKKDMRSKYISRYIILFALATGARFSEILGLTWDCIDFKNRMVTINKTWDYKFTNDFADT
KTYSSKRTIKIDEDTCKILKELRKAQNEVAMKTGLRNEKNLVFVNTKMELVSNNAVNKTLKTLCRKLGLKEVTMHSLRHT
HASMLLYRKANIKYISKRLGHKDIGITLQTYSHILDELEQAENMLLDQIMDDLYHAK

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786748, Length=424, Percent_Identity=22.4056603773585, Blast_Score=76, Evalue=4e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 44446; Mature: 44315

Theoretical pI: Translated: 10.05; Mature: 10.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASIQKMKNGRWRYRVSYKENGKYKTKTKGGFRTKKEAELAAAELEKQLHKGYDINAGDQ
CCCHHHHHCCCEEEEEEECCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHH
LFPEYMRNWFELYKKGKHSPEHDKNVEYSVQLVEEYFAGVKMKELTRDMYQKFINEIAET
HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
RTTETVKKRHTYIKECIKAAIEEGVIIRDPTYKVVVKGKKKGKDEELKYLNYQEAKQLIA
HHHHHHHHHHHHHHHHHHHHHHCCEEEECCCEEEEEECCCCCCCHHHHHCCHHHHHHHHH
EIKKDMRSKYISRYIILFALATGARFSEILGLTWDCIDFKNRMVTINKTWDYKFTNDFAD
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCHHHEECCCCEEEEEECCCCEECCCCCC
TKTYSSKRTIKIDEDTCKILKELRKAQNEVAMKTGLRNEKNLVFVNTKMELVSNNAVNKT
CCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHHCCHHHHH
LKTLCRKLGLKEVTMHSLRHTHASMLLYRKANIKYISKRLGHKDIGITLQTYSHILDELE
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCEEHHHHHHHHHHHH
QAENMLLDQIMDDLYHAK
HHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
ASIQKMKNGRWRYRVSYKENGKYKTKTKGGFRTKKEAELAAAELEKQLHKGYDINAGDQ
CCHHHHHCCCEEEEEEECCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHH
LFPEYMRNWFELYKKGKHSPEHDKNVEYSVQLVEEYFAGVKMKELTRDMYQKFINEIAET
HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
RTTETVKKRHTYIKECIKAAIEEGVIIRDPTYKVVVKGKKKGKDEELKYLNYQEAKQLIA
HHHHHHHHHHHHHHHHHHHHHHCCEEEECCCEEEEEECCCCCCCHHHHHCCHHHHHHHHH
EIKKDMRSKYISRYIILFALATGARFSEILGLTWDCIDFKNRMVTINKTWDYKFTNDFAD
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCHHHEECCCCEEEEEECCCCEECCCCCC
TKTYSSKRTIKIDEDTCKILKELRKAQNEVAMKTGLRNEKNLVFVNTKMELVSNNAVNKT
CCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHHCCHHHHH
LKTLCRKLGLKEVTMHSLRHTHASMLLYRKANIKYISKRLGHKDIGITLQTYSHILDELE
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCEEHHHHHHHHHHHH
QAENMLLDQIMDDLYHAK
HHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11997336 [H]