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The map label for this gene is ysgA [H]

Identifier: 138896271

GI number: 138896271

Start: 2744085

End: 2744840

Strand: Reverse

Name: ysgA [H]

Synonym: GTNG_2634

Alternate gene names: 138896271

Gene position: 2744840-2744085 (Counterclockwise)

Preceding gene: 138896272

Following gene: 138896270

Centisome position: 77.31

GC content: 53.44

Gene sequence:

>756_bases
GTGAAGCGGATCGAATCGCCGAAAAATGCACGTGTAAAGCATTGGAAAAAGTTATTGACGAAAAAAGGACGCGAGGAAAC
CGGGTGCTTTTTGCTAGAAGGATTTCATCTCGTTGAAGAGGCAGTCAAAAGCCAAGCGCCGCTTGTCGAGTTGATTGTGG
ATGAACGGACGACGATCCCGCCCGGCTGGGACGTCAGCGATGTTCCGGTAGTGATCGTGACCGAGACGGTGATGAAGGCG
ATCAGCAGCACGGAAACGCCGCAAGGGATCGCTGCCATCTGTCGTCAGCGGCCGCATGAGCTTACAGGTGTGAAAACGGC
GTTGCTCATTGATGCCGTGCAAGACCCAGGCAATCTTGGCACAATGATTCGCACTGCCGACGCAGCCGGCATTGATGCTG
TCATTTTAGGAGAAGGATGCGCTGACTTGTACAATCCGAAAGTGATCCGCGCAACCCAAGGGTCGTTGTTTCATCTTCCG
GTTGTCAAAGGCGATGTGGCAGAATGGATCACGCGCTTGAAAGAGCAAGGTGTTCCAGTGTACGGCACCGCCTTGGAGAA
TGCGGTCGACTACCGTGCCATCCCGCAATCATCCTCATTTGCGCTTTTAGTTGGCAATGAAGGAAGCGGCGTCCGGCGCG
AGCTGCTCGAGATGACAACGGAAAATGTCTACATTCCGATTTACGGCCAAGCCGAGTCACTCAACGTTGCCGTTGCAGCT
GGAATTTTACTTTACTCCTTGCAGACGGCGCAGTAA

Upstream 100 bases:

>100_bases
ACCATCAAAACTACCATAAGAAAAATCCGGAGCATTACAAGCAAGATCGTGCCGCTTCCGGGCGCGACGAGTTTATCGCC
AAACATTGGGGGGCGAAGCG

Downstream 100 bases:

>100_bases
AAAATTTCTGACTTACCTTGCCTTTGTCTCTTGGTTTGCGTATAATGAATAGCGACATTTCCCATATCGATAACAACGAT
GACGGAGAAGAGTAGCTTGC

Product: rRNA methyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 251; Mature: 251

Protein sequence:

>251_residues
MKRIESPKNARVKHWKKLLTKKGREETGCFLLEGFHLVEEAVKSQAPLVELIVDERTTIPPGWDVSDVPVVIVTETVMKA
ISSTETPQGIAAICRQRPHELTGVKTALLIDAVQDPGNLGTMIRTADAAGIDAVILGEGCADLYNPKVIRATQGSLFHLP
VVKGDVAEWITRLKEQGVPVYGTALENAVDYRAIPQSSSFALLVGNEGSGVRRELLEMTTENVYIPIYGQAESLNVAVAA
GILLYSLQTAQ

Sequences:

>Translated_251_residues
MKRIESPKNARVKHWKKLLTKKGREETGCFLLEGFHLVEEAVKSQAPLVELIVDERTTIPPGWDVSDVPVVIVTETVMKA
ISSTETPQGIAAICRQRPHELTGVKTALLIDAVQDPGNLGTMIRTADAAGIDAVILGEGCADLYNPKVIRATQGSLFHLP
VVKGDVAEWITRLKEQGVPVYGTALENAVDYRAIPQSSSFALLVGNEGSGVRRELLEMTTENVYIPIYGQAESLNVAVAA
GILLYSLQTAQ
>Mature_251_residues
MKRIESPKNARVKHWKKLLTKKGREETGCFLLEGFHLVEEAVKSQAPLVELIVDERTTIPPGWDVSDVPVVIVTETVMKA
ISSTETPQGIAAICRQRPHELTGVKTALLIDAVQDPGNLGTMIRTADAAGIDAVILGEGCADLYNPKVIRATQGSLFHLP
VVKGDVAEWITRLKEQGVPVYGTALENAVDYRAIPQSSSFALLVGNEGSGVRRELLEMTTENVYIPIYGQAESLNVAVAA
GILLYSLQTAQ

Specific function: Unknown

COG id: COG0566

COG function: function code J; rRNA methylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family [H]

Homologues:

Organism=Homo sapiens, GI8922534, Length=172, Percent_Identity=34.3023255813954, Blast_Score=83, Evalue=3e-16,
Organism=Escherichia coli, GI1790623, Length=139, Percent_Identity=35.2517985611511, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1790083, Length=168, Percent_Identity=30.3571428571429, Blast_Score=73, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001537
- InterPro:   IPR013123 [H]

Pfam domain/function: PF00588 SpoU_methylase; PF08032 SpoU_sub_bind [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 27186; Mature: 27186

Theoretical pI: Translated: 5.39; Mature: 5.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRIESPKNARVKHWKKLLTKKGREETGCFLLEGFHLVEEAVKSQAPLVELIVDERTTIP
CCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHCCCCEEEEEECCCCCCC
PGWDVSDVPVVIVTETVMKAISSTETPQGIAAICRQRPHELTGVKTALLIDAVQDPGNLG
CCCCCCCCCEEEEHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCC
TMIRTADAAGIDAVILGEGCADLYNPKVIRATQGSLFHLPVVKGDVAEWITRLKEQGVPV
HHEEECCCCCCCEEEECCCCHHHCCCEEEEECCCCEEEECCCCCHHHHHHHHHHHCCCCE
YGTALENAVDYRAIPQSSSFALLVGNEGSGVRRELLEMTTENVYIPIYGQAESLNVAVAA
EEHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCEEEEEECCCCCCHHHHHH
GILLYSLQTAQ
HHHHHHHCCCC
>Mature Secondary Structure
MKRIESPKNARVKHWKKLLTKKGREETGCFLLEGFHLVEEAVKSQAPLVELIVDERTTIP
CCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHCCCCEEEEEECCCCCCC
PGWDVSDVPVVIVTETVMKAISSTETPQGIAAICRQRPHELTGVKTALLIDAVQDPGNLG
CCCCCCCCCEEEEHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCC
TMIRTADAAGIDAVILGEGCADLYNPKVIRATQGSLFHLPVVKGDVAEWITRLKEQGVPV
HHEEECCCCCCCEEEECCCCHHHCCCEEEEECCCCEEEECCCCCHHHHHHHHHHHCCCCE
YGTALENAVDYRAIPQSSSFALLVGNEGSGVRRELLEMTTENVYIPIYGQAESLNVAVAA
EEHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCEEEEEECCCCCCHHHHHH
GILLYSLQTAQ
HHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]