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The map label for this gene is yshB [H]

Identifier: 138896259

GI number: 138896259

Start: 2730352

End: 2730891

Strand: Reverse

Name: yshB [H]

Synonym: GTNG_2622

Alternate gene names: 138896259

Gene position: 2730891-2730352 (Counterclockwise)

Preceding gene: 138896260

Following gene: 138896258

Centisome position: 76.92

GC content: 47.78

Gene sequence:

>540_bases
ATGATTGATGTCGTGCTTTTATTTGTCCTGCTGTTAGGCGCGATGATCGGACTAAAGCGCGGTTTTATTCTTCAATTTAT
CCATATGGCAGGGTTTCTCATCGCCTTTTTTGTCGCTTATAAGTATTATGATCGATTTGTGCCGACATTGCGCCTTTGGA
TTCCGTATCCGACGTTTGGCGATCCGGAGACAGTGAAGTTGTTGTTTCAAAGCACGCATTTAGATGATGCGTATTATCGG
GCGATTTCGTTTGCACTCTTATTTTTTGCCGTGAAAATTGTGCTTCAAATCGTCGGTTCGATGCTCGACTTTGTCGCCCA
ACTGCCGCTGTTGCGCAGCGTCAACCGTGTAGCGGGGGCAGCGCTCGGATTCGCTGAAGTGTATTTGTTTGTGTTTTTGC
TTTTGTATGTGAGCGCGCTCGTGCCGATCGATAGCGTGCAAGAGCAGTTGCAGCAGTCGCTCATGGCGACGGTCATCGTG
AAACATACACCAATCTTGTCGGAGATGCTTAGCAACTGGTGGATTCATGGCCGCATCTAA

Upstream 100 bases:

>100_bases
GTGTTGACGGCAGTCAATATCGCCAATGAATACTTAAAGCTGAAGGAAGAATACGATCGGCTTGCAGCCAAGTTGAGACG
GGAAAAGGGTGGGGAAGACG

Downstream 100 bases:

>100_bases
CGGAGCGCGGCCCGCGGTGTTTCGGAAAAGGGAGGGGACGGCATGAACGTGAACAAAAAAGATGTCATCCGCCTGTTAGA
GACGATCGCCTTATATATGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 179; Mature: 179

Protein sequence:

>179_residues
MIDVVLLFVLLLGAMIGLKRGFILQFIHMAGFLIAFFVAYKYYDRFVPTLRLWIPYPTFGDPETVKLLFQSTHLDDAYYR
AISFALLFFAVKIVLQIVGSMLDFVAQLPLLRSVNRVAGAALGFAEVYLFVFLLLYVSALVPIDSVQEQLQQSLMATVIV
KHTPILSEMLSNWWIHGRI

Sequences:

>Translated_179_residues
MIDVVLLFVLLLGAMIGLKRGFILQFIHMAGFLIAFFVAYKYYDRFVPTLRLWIPYPTFGDPETVKLLFQSTHLDDAYYR
AISFALLFFAVKIVLQIVGSMLDFVAQLPLLRSVNRVAGAALGFAEVYLFVFLLLYVSALVPIDSVQEQLQQSLMATVIV
KHTPILSEMLSNWWIHGRI
>Mature_179_residues
MIDVVLLFVLLLGAMIGLKRGFILQFIHMAGFLIAFFVAYKYYDRFVPTLRLWIPYPTFGDPETVKLLFQSTHLDDAYYR
AISFALLFFAVKIVLQIVGSMLDFVAQLPLLRSVNRVAGAALGFAEVYLFVFLLLYVSALVPIDSVQEQLQQSLMATVIV
KHTPILSEMLSNWWIHGRI

Specific function: Unknown

COG id: COG1286

COG function: function code R; Uncharacterized membrane protein, required for colicin V production

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003825 [H]

Pfam domain/function: PF02674 Colicin_V [H]

EC number: NA

Molecular weight: Translated: 20395; Mature: 20395

Theoretical pI: Translated: 8.78; Mature: 8.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDVVLLFVLLLGAMIGLKRGFILQFIHMAGFLIAFFVAYKYYDRFVPTLRLWIPYPTFG
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
DPETVKLLFQSTHLDDAYYRAISFALLFFAVKIVLQIVGSMLDFVAQLPLLRSVNRVAGA
CHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALGFAEVYLFVFLLLYVSALVPIDSVQEQLQQSLMATVIVKHTPILSEMLSNWWIHGRI
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MIDVVLLFVLLLGAMIGLKRGFILQFIHMAGFLIAFFVAYKYYDRFVPTLRLWIPYPTFG
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
DPETVKLLFQSTHLDDAYYRAISFALLFFAVKIVLQIVGSMLDFVAQLPLLRSVNRVAGA
CHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALGFAEVYLFVFLLLYVSALVPIDSVQEQLQQSLMATVIVKHTPILSEMLSNWWIHGRI
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]