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The map label for this gene is fadR [H]

Identifier: 138896253

GI number: 138896253

Start: 2723173

End: 2723760

Strand: Reverse

Name: fadR [H]

Synonym: GTNG_2616

Alternate gene names: 138896253

Gene position: 2723760-2723173 (Counterclockwise)

Preceding gene: 138896254

Following gene: 138896252

Centisome position: 76.72

GC content: 49.15

Gene sequence:

>588_bases
TTGCGTAGGGAGAAACCGAAGTTTAAGCAAATTATTGATGCAGCCGTCGTCGTCATCGCCGAACATGGCTATCATCAGGC
GCAAGTGTCGAAAATCGCGAAGCAGGCTGGTGTCGCCGACGGCACGATCTACCTTTATTTCAAAAACAAAGAAGATATTT
TAATCTCGCTTTTCCAAGAAAAAATGGGGTCGTTTATCGAGAAAATCGAGCAAGAAATAGAAGGAATTTCGAGTCCGCTA
GAGAAATTGTATGTATTGGTGAGAACTCATTTTTCCGCCCTGGCTGATGATCCGCATATGGCGGTCGTGACGCAGCTTGA
GCTGCGCCAGTCGAACAAAGAGCTGCGCCAACGCATCAATGAGGTGCTGAAAGGATATTTGCGGCTCATCGACAGCATCA
TCATCGAGGGAATGGAAAAAGGAGAATTCCGAAATGATCTAGACGTCCGGCTCACCCGGCAAATGATCTTCGGCACGATC
GACGAGACGGTGACGACATGGGTCATGAATGAGCAAAAATACGACTTGGCTGCGCTCGCCGAGCCAGTGTACGAATTGCT
TGCCAAAGGGTGCGCTGCTGGGCGTTGA

Upstream 100 bases:

>100_bases
AAAGAGCTTGACAAATCGACAGAACAGTCCGTAAAATAGGATTGTGAATGATTATTCATTCAGTTGGTGACAGGTGATGT
TGAGAAAAGGAGAATGACGA

Downstream 100 bases:

>100_bases
TGGAAGGCAGAAAGGGGAGAGGCATCATGGAGCATTTTCGCTTGACAAAAGAGGAATTCGTCGCTGTCGTGACGTTTTCG
CGGCCGCCGGCGAATGCTCT

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 195; Mature: 195

Protein sequence:

>195_residues
MRREKPKFKQIIDAAVVVIAEHGYHQAQVSKIAKQAGVADGTIYLYFKNKEDILISLFQEKMGSFIEKIEQEIEGISSPL
EKLYVLVRTHFSALADDPHMAVVTQLELRQSNKELRQRINEVLKGYLRLIDSIIIEGMEKGEFRNDLDVRLTRQMIFGTI
DETVTTWVMNEQKYDLAALAEPVYELLAKGCAAGR

Sequences:

>Translated_195_residues
MRREKPKFKQIIDAAVVVIAEHGYHQAQVSKIAKQAGVADGTIYLYFKNKEDILISLFQEKMGSFIEKIEQEIEGISSPL
EKLYVLVRTHFSALADDPHMAVVTQLELRQSNKELRQRINEVLKGYLRLIDSIIIEGMEKGEFRNDLDVRLTRQMIFGTI
DETVTTWVMNEQKYDLAALAEPVYELLAKGCAAGR
>Mature_195_residues
MRREKPKFKQIIDAAVVVIAEHGYHQAQVSKIAKQAGVADGTIYLYFKNKEDILISLFQEKMGSFIEKIEQEIEGISSPL
EKLYVLVRTHFSALADDPHMAVVTQLELRQSNKELRQRINEVLKGYLRLIDSIIIEGMEKGEFRNDLDVRLTRQMIFGTI
DETVTTWVMNEQKYDLAALAEPVYELLAKGCAAGR

Specific function: Transcriptional regulator in fatty acid degradation. Represses transcription of genes required for fatty acid transport and beta-oxidation, including acdA, fadA, fadB, fadE, fadF, fadG, fadH, fadM, fadN, lcfA and lcfB. Binding of FadR to DNA is specifical

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647
- InterPro:   IPR013570 [H]

Pfam domain/function: PF08359 TetR_C_4; PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 22274; Mature: 22274

Theoretical pI: Translated: 6.14; Mature: 6.14

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRREKPKFKQIIDAAVVVIAEHGYHQAQVSKIAKQAGVADGTIYLYFKNKEDILISLFQE
CCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHH
KMGSFIEKIEQEIEGISSPLEKLYVLVRTHFSALADDPHMAVVTQLELRQSNKELRQRIN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
EVLKGYLRLIDSIIIEGMEKGEFRNDLDVRLTRQMIFGTIDETVTTWVMNEQKYDLAALA
HHHHHHHHHHHHHHHHCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
EPVYELLAKGCAAGR
HHHHHHHHHHHCCCC
>Mature Secondary Structure
MRREKPKFKQIIDAAVVVIAEHGYHQAQVSKIAKQAGVADGTIYLYFKNKEDILISLFQE
CCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHH
KMGSFIEKIEQEIEGISSPLEKLYVLVRTHFSALADDPHMAVVTQLELRQSNKELRQRIN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
EVLKGYLRLIDSIIIEGMEKGEFRNDLDVRLTRQMIFGTIDETVTTWVMNEQKYDLAALA
HHHHHHHHHHHHHHHHCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
EPVYELLAKGCAAGR
HHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]