Click here to switch to the map view.

The map label for this gene is nusB

Identifier: 138895967

GI number: 138895967

Start: 2450412

End: 2450804

Strand: Reverse

Name: nusB

Synonym: GTNG_2328

Alternate gene names: 138895967

Gene position: 2450804-2450412 (Counterclockwise)

Preceding gene: 138895968

Following gene: 138895966

Centisome position: 69.03

GC content: 49.36

Gene sequence:

>393_bases
ATGAAGCGGCATGAAGCACGCGAAAAGGCGTTACAGGCGCTATTCCAAATCGATGTTGGTCACATTCCTCCTGATGAGGC
GATCGGCAATGTGACAGGAAGCGGCGAAGTGGATCCGTTTTTGCGCCAGCTCGTATTCGATGTTATTGAGCACCGGGCGG
AAATTGACGAGCTGTTGCGCTCGAATTTGGAAAAATGGAAGCTCGAGCGGGTCGCCAATGTTGACCGGGTTATTTTACGA
ATGGCGACGTATGAAATGAAATATGTCGATGACGTGCCAGTGAGTGTCAGCCTCGATGAGGCGGTTGAACTAGCGAAAAA
ATTTGGCGATTGGAAATCCGGAAGCTTTGTCAACGGCGTGCTTTCAAAAGTGAAAGCGGCGTTGCAAAAATAA

Upstream 100 bases:

>100_bases
AAACCGGTATCGCTAATGATTTGTGGGAAAGGGCTGGCTTTTTCCGAAAAATATGATATGATTTCAATATAAATGTTCGT
GATTAGGGAGGAGGAAGGTA

Downstream 100 bases:

>100_bases
CAACCGCAAGCAGCAAACGAAGCTTCGATTTACCTAGGTGTAGGCGGACTCATATTGACCAATGAATGAGGAGAGGGGAA
GCGAGACACAATGACAGCAC

Product: transcription antitermination protein NusB

Products: NA

Alternate protein names: Protein nusB

Number of amino acids: Translated: 130; Mature: 130

Protein sequence:

>130_residues
MKRHEAREKALQALFQIDVGHIPPDEAIGNVTGSGEVDPFLRQLVFDVIEHRAEIDELLRSNLEKWKLERVANVDRVILR
MATYEMKYVDDVPVSVSLDEAVELAKKFGDWKSGSFVNGVLSKVKAALQK

Sequences:

>Translated_130_residues
MKRHEAREKALQALFQIDVGHIPPDEAIGNVTGSGEVDPFLRQLVFDVIEHRAEIDELLRSNLEKWKLERVANVDRVILR
MATYEMKYVDDVPVSVSLDEAVELAKKFGDWKSGSFVNGVLSKVKAALQK
>Mature_130_residues
MKRHEAREKALQALFQIDVGHIPPDEAIGNVTGSGEVDPFLRQLVFDVIEHRAEIDELLRSNLEKWKLERVANVDRVILR
MATYEMKYVDDVPVSVSLDEAVELAKKFGDWKSGSFVNGVLSKVKAALQK

Specific function: Involved in the transcription termination process

COG id: COG0781

COG function: function code K; Transcription termination factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nusB family

Homologues:

Organism=Escherichia coli, GI1786618, Length=84, Percent_Identity=41.6666666666667, Blast_Score=66, Evalue=6e-13,

Paralogues:

None

Copy number: 900 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NUSB_GEOTN (A4IQS1)

Other databases:

- EMBL:   CP000557
- RefSeq:   YP_001126420.1
- ProteinModelPortal:   A4IQS1
- SMR:   A4IQS1
- STRING:   A4IQS1
- GeneID:   4967254
- GenomeReviews:   CP000557_GR
- KEGG:   gtn:GTNG_2328
- NMPDR:   fig|420246.5.peg.2234
- eggNOG:   COG0781
- HOGENOM:   HBG734409
- OMA:   DINQSAM
- PhylomeDB:   A4IQS1
- ProtClustDB:   PRK00202
- BioCyc:   GTHE420246:GTNG_2328-MONOMER
- HAMAP:   MF_00073
- InterPro:   IPR011605
- InterPro:   IPR006027
- Gene3D:   G3DSA:1.10.940.10
- TIGRFAMs:   TIGR01951

Pfam domain/function: PF01029 NusB; SSF48013 NusB_RsmB_TIM44

EC number: NA

Molecular weight: Translated: 14704; Mature: 14704

Theoretical pI: Translated: 5.72; Mature: 5.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRHEAREKALQALFQIDVGHIPPDEAIGNVTGSGEVDPFLRQLVFDVIEHRAEIDELLR
CCHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
SNLEKWKLERVANVDRVILRMATYEMKYVDDVPVSVSLDEAVELAKKFGDWKSGSFVNGV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHH
LSKVKAALQK
HHHHHHHHCC
>Mature Secondary Structure
MKRHEAREKALQALFQIDVGHIPPDEAIGNVTGSGEVDPFLRQLVFDVIEHRAEIDELLR
CCHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
SNLEKWKLERVANVDRVILRMATYEMKYVDDVPVSVSLDEAVELAKKFGDWKSGSFVNGV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHH
LSKVKAALQK
HHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA