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The map label for this gene is yqxC [H]

Identifier: 138895962

GI number: 138895962

Start: 2443976

End: 2444821

Strand: Reverse

Name: yqxC [H]

Synonym: GTNG_2321

Alternate gene names: 138895962

Gene position: 2444821-2443976 (Counterclockwise)

Preceding gene: 138895963

Following gene: 138895961

Centisome position: 68.86

GC content: 52.25

Gene sequence:

>846_bases
ATGAAAGGAAAGAAAGAACGGCTCGATGTGTTGCTTGTTGAACGCGGGTTGGTAGAAACGCGGGAAAAGGCGAAGCGGGC
CATCATGGCCGGGCTTGTCTATTCAAACGACATCCGGCTCGAGAAACCCGGAGAAAAAGTGCCGGCTGACATCCCGCTCG
AGGTGAAAGGCAATCCGCTTCCATACGTCAGCCGCGGCGGCTTAAAATTGGAAAAAGCGTTGCGTGAGTTTCAGATCAGC
GTTGAAAATAAAATTGTGCTCGATATCGGCGCGTCGACTGGCGGATTTACTGATTGTGCTTTACAACACGGGGCGAAGTT
ATCGTACGCCGTTGACGTCGGCTATAACCAGCTCGCGTGGAAGCTTCGTCAGGACGAGCGTGTCGTTGTCATGGAGCGAA
CGAACTTCCGTTACGTGACGCCGGATTTGTTTACAAAAGGGATGCCGGAAGTAGCGGTTATTGACGTATCATTCATTTCG
CTTCGACTCATTTTGCCTGTCGTTAAGACGGTTATTGTGCCGGGCGGTGATGTGATCGCCCTCGTCAAGCCGCAGTTTGA
AGCCGGCAAGGAAAACGTCGGCAAAAAAGGGATCGTCCGCGATCCGGATGTCCATCGGGAAGTGCTTGAGTCGATCGTTC
AATTTGCCTGTGCCGAAGGGTTCGATATCCTCCATTTGTCTTATTCGCCGATCACCGGCGGCGACGGCAACATTGAGTTT
TTGCTTCATGTTGTCTATTCTGGGGGAGAGAAAGGCGAAAATCGTCTTTCGGCGCCGATCGCCCATATCGTGAACGAGGC
GCACGATCGCTTGCGGACCGGACAACAAGAATCAGATGCTAAATAA

Upstream 100 bases:

>100_bases
GTGTCAGCGAGCTGCTGGACGAAATCGGGCTGACGGCAGCCCATGTCGCTGATCGCATCAAAACGATTATGCCAAGAAAA
CAGAAAAGGGCTTGAGAAAG

Downstream 100 bases:

>100_bases
GCGTCTTCTGTGAAAAAGGTGGGCCCCTGCAGGGCGGAACGGGCAGAAAACCTGCATCTTTGAACATAAGGAGGTGGCTC
GATTTGAACAAAGGGCAACG

Product: hemolysin A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 281; Mature: 281

Protein sequence:

>281_residues
MKGKKERLDVLLVERGLVETREKAKRAIMAGLVYSNDIRLEKPGEKVPADIPLEVKGNPLPYVSRGGLKLEKALREFQIS
VENKIVLDIGASTGGFTDCALQHGAKLSYAVDVGYNQLAWKLRQDERVVVMERTNFRYVTPDLFTKGMPEVAVIDVSFIS
LRLILPVVKTVIVPGGDVIALVKPQFEAGKENVGKKGIVRDPDVHREVLESIVQFACAEGFDILHLSYSPITGGDGNIEF
LLHVVYSGGEKGENRLSAPIAHIVNEAHDRLRTGQQESDAK

Sequences:

>Translated_281_residues
MKGKKERLDVLLVERGLVETREKAKRAIMAGLVYSNDIRLEKPGEKVPADIPLEVKGNPLPYVSRGGLKLEKALREFQIS
VENKIVLDIGASTGGFTDCALQHGAKLSYAVDVGYNQLAWKLRQDERVVVMERTNFRYVTPDLFTKGMPEVAVIDVSFIS
LRLILPVVKTVIVPGGDVIALVKPQFEAGKENVGKKGIVRDPDVHREVLESIVQFACAEGFDILHLSYSPITGGDGNIEF
LLHVVYSGGEKGENRLSAPIAHIVNEAHDRLRTGQQESDAK
>Mature_281_residues
MKGKKERLDVLLVERGLVETREKAKRAIMAGLVYSNDIRLEKPGEKVPADIPLEVKGNPLPYVSRGGLKLEKALREFQIS
VENKIVLDIGASTGGFTDCALQHGAKLSYAVDVGYNQLAWKLRQDERVVVMERTNFRYVTPDLFTKGMPEVAVIDVSFIS
LRLILPVVKTVIVPGGDVIALVKPQFEAGKENVGKKGIVRDPDVHREVLESIVQFACAEGFDILHLSYSPITGGDGNIEF
LLHVVYSGGEKGENRLSAPIAHIVNEAHDRLRTGQQESDAK

Specific function: Unknown

COG id: COG1189

COG function: function code J; Predicted rRNA methylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004538
- InterPro:   IPR002877
- InterPro:   IPR002942 [H]

Pfam domain/function: PF01728 FtsJ; PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 30951; Mature: 30951

Theoretical pI: Translated: 7.15; Mature: 7.15

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKGKKERLDVLLVERGLVETREKAKRAIMAGLVYSNDIRLEKPGEKVPADIPLEVKGNPL
CCCCHHHHHEEEEHHCHHHHHHHHHHHHHHHHEECCCEEEECCCCCCCCCCCEEECCCCC
PYVSRGGLKLEKALREFQISVENKIVLDIGASTGGFTDCALQHGAKLSYAVDVGYNQLAW
CEECCCCCHHHHHHHHHEEECCCEEEEEECCCCCCCHHHHHHCCCCEEEEEECCCHHHHE
KLRQDERVVVMERTNFRYVTPDLFTKGMPEVAVIDVSFISLRLILPVVKTVIVPGGDVIA
EECCCCEEEEEEECCCEEECHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHCCCCCCEEE
LVKPQFEAGKENVGKKGIVRDPDVHREVLESIVQFACAEGFDILHLSYSPITGGDGNIEF
EECCCCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCEE
LLHVVYSGGEKGENRLSAPIAHIVNEAHDRLRTGQQESDAK
EEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MKGKKERLDVLLVERGLVETREKAKRAIMAGLVYSNDIRLEKPGEKVPADIPLEVKGNPL
CCCCHHHHHEEEEHHCHHHHHHHHHHHHHHHHEECCCEEEECCCCCCCCCCCEEECCCCC
PYVSRGGLKLEKALREFQISVENKIVLDIGASTGGFTDCALQHGAKLSYAVDVGYNQLAW
CEECCCCCHHHHHHHHHEEECCCEEEEEECCCCCCCHHHHHHCCCCEEEEEECCCHHHHE
KLRQDERVVVMERTNFRYVTPDLFTKGMPEVAVIDVSFISLRLILPVVKTVIVPGGDVIA
EECCCCEEEEEEECCCEEECHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHCCCCCCEEE
LVKPQFEAGKENVGKKGIVRDPDVHREVLESIVQFACAEGFDILHLSYSPITGGDGNIEF
EECCCCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCEE
LLHVVYSGGEKGENRLSAPIAHIVNEAHDRLRTGQQESDAK
EEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377; 2507400 [H]