Click here to switch to the map view.

The map label for this gene is ypdF [C]

Identifier: 138895929

GI number: 138895929

Start: 2406946

End: 2408121

Strand: Reverse

Name: ypdF [C]

Synonym: GTNG_2288

Alternate gene names: 138895929

Gene position: 2408121-2406946 (Counterclockwise)

Preceding gene: 138895930

Following gene: 138895928

Centisome position: 67.83

GC content: 40.9

Gene sequence:

>1176_bases
ATGTTACCGTTTGAGAAAACGGAGTATCAACATCGTGAAAAAAGGATAAAAAAGAGCATGGAAGCGCAAGGAATCGAAGT
ATTATTCGTTACAGATCCAGCGAATATGAACTATATAACAGGATACGATGCTCTGTCTTATTATGTGCCTCAAGGGGTAA
TCGTCTCATCTTATTTGAAAGAACCTATATGCATCATACGGCAGCAAGATGTATACTGTGCGCTCCACACCACTTGGATG
TCAAAAGAAAGCATCATACCGTATCCTGATAAATATTTGTGGGAACCGAAAGTGCTTCATGTCATGGATTTTGTAGGAGA
TGTGTTGAGGGAAAAGGGACTCCATAATAAAAGAATCGGGGTCGAGCTCGATAGTTATTACTTTAATGCTCATTGGTATC
ACAGACTAGAAAAAAGTTTGCCAGATGCAGAATTGGTAGATGCGACATCACTTGTAAACTGGATAAGGGGGCAAAAATCA
ACAAAAGAATTAGAATACATGCAAATAGCTGCAAGAATTGTAGAAAAAGCAATGTACAACGCCATAGAAAACATCGATGT
TGGCGTAAGGGAATGCCGCGTTGCGGCAGGAATTTATAGTGACTTATTGAATGGGACAGGGGTATATGGCGGCGAATATC
CATCACTTTCACCGATAATGCCTGCAGGAGAAAGAACCGCAGGGGCGCATTTTTCATGGACAACAGAAGGCAAATATCAA
AAAGATCAGTTAGTATATATGGAATTGTCGGGAAGCTATAAGCGCTACCACGCTCCTTTAACAAGAACGGTCTTTATTGG
GAAACCGCCTGAGAAAGTACGCGAAACGGCAAAAATAGTAATAGAAGGCCTAAATGTGGCATTATCCACGATAAAACCAG
GAGTGACATGTGAAGAAGTCGAGCAAGCATGGCAAACAACGATCAATCAATATGGGCTGGAAAAAGAGTCTAGAATGGGA
TATACAGTTGGTCTAAGCTATCCGCCTGTATGGACAGAAAACACAGCGTATTTTAAACCCGGAGAGAAGACGGTACTAAA
ACCGAACATGACTTTTCATATCATGCCCGGAATGTGGCTTGACGGTTATGGAGTCGCAATAACCGAAACCATAAGAGTGA
CTGAAAACGGTTGTGAAACAATCACAAAATTTCCAAGGGAATTATTCATTAAATAG

Upstream 100 bases:

>100_bases
ATGATTTTTATAAACAGTCCCTGCTCTTTCCTAGCTTTTCAACGTCTAGGATGGCTGAGCTGCCTAACGGACTCAGTAAA
AATAGCGAGGTGGTTGAATC

Downstream 100 bases:

>100_bases
AAAGTATATGTCATTATAAAAGATTTACAAATGCACATCTACTCATTTGGAGTACGTGTGCTTTTATTATATGATAAAAA
GCCTGCTGGAGGTCATTATG

Product: Xaa-Pro aminopeptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 391; Mature: 391

Protein sequence:

>391_residues
MLPFEKTEYQHREKRIKKSMEAQGIEVLFVTDPANMNYITGYDALSYYVPQGVIVSSYLKEPICIIRQQDVYCALHTTWM
SKESIIPYPDKYLWEPKVLHVMDFVGDVLREKGLHNKRIGVELDSYYFNAHWYHRLEKSLPDAELVDATSLVNWIRGQKS
TKELEYMQIAARIVEKAMYNAIENIDVGVRECRVAAGIYSDLLNGTGVYGGEYPSLSPIMPAGERTAGAHFSWTTEGKYQ
KDQLVYMELSGSYKRYHAPLTRTVFIGKPPEKVRETAKIVIEGLNVALSTIKPGVTCEEVEQAWQTTINQYGLEKESRMG
YTVGLSYPPVWTENTAYFKPGEKTVLKPNMTFHIMPGMWLDGYGVAITETIRVTENGCETITKFPRELFIK

Sequences:

>Translated_391_residues
MLPFEKTEYQHREKRIKKSMEAQGIEVLFVTDPANMNYITGYDALSYYVPQGVIVSSYLKEPICIIRQQDVYCALHTTWM
SKESIIPYPDKYLWEPKVLHVMDFVGDVLREKGLHNKRIGVELDSYYFNAHWYHRLEKSLPDAELVDATSLVNWIRGQKS
TKELEYMQIAARIVEKAMYNAIENIDVGVRECRVAAGIYSDLLNGTGVYGGEYPSLSPIMPAGERTAGAHFSWTTEGKYQ
KDQLVYMELSGSYKRYHAPLTRTVFIGKPPEKVRETAKIVIEGLNVALSTIKPGVTCEEVEQAWQTTINQYGLEKESRMG
YTVGLSYPPVWTENTAYFKPGEKTVLKPNMTFHIMPGMWLDGYGVAITETIRVTENGCETITKFPRELFIK
>Mature_391_residues
MLPFEKTEYQHREKRIKKSMEAQGIEVLFVTDPANMNYITGYDALSYYVPQGVIVSSYLKEPICIIRQQDVYCALHTTWM
SKESIIPYPDKYLWEPKVLHVMDFVGDVLREKGLHNKRIGVELDSYYFNAHWYHRLEKSLPDAELVDATSLVNWIRGQKS
TKELEYMQIAARIVEKAMYNAIENIDVGVRECRVAAGIYSDLLNGTGVYGGEYPSLSPIMPAGERTAGAHFSWTTEGKYQ
KDQLVYMELSGSYKRYHAPLTRTVFIGKPPEKVRETAKIVIEGLNVALSTIKPGVTCEEVEQAWQTTINQYGLEKESRMG
YTVGLSYPPVWTENTAYFKPGEKTVLKPNMTFHIMPGMWLDGYGVAITETIRVTENGCETITKFPRELFIK

Specific function: Unknown

COG id: COG0006

COG function: function code E; Xaa-Pro aminopeptidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M24 family [H]

Homologues:

Organism=Escherichia coli, GI1788728, Length=265, Percent_Identity=26.4150943396226, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1789275, Length=269, Percent_Identity=23.7918215613383, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000587
- InterPro:   IPR000994 [H]

Pfam domain/function: PF01321 Creatinase_N; PF00557 Peptidase_M24 [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 44714; Mature: 44714

Theoretical pI: Translated: 6.61; Mature: 6.61

Prosite motif: PS00307 LECTIN_LEGUME_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLPFEKTEYQHREKRIKKSMEAQGIEVLFVTDPANMNYITGYDALSYYVPQGVIVSSYLK
CCCCCCHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCEEECCHHHHHHCCCCHHHHHHHC
EPICIIRQQDVYCALHTTWMSKESIIPYPDKYLWEPKVLHVMDFVGDVLREKGLHNKRIG
CCEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCC
VELDSYYFNAHWYHRLEKSLPDAELVDATSLVNWIRGQKSTKELEYMQIAARIVEKAMYN
EEEECEEECHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
AIENIDVGVRECRVAAGIYSDLLNGTGVYGGEYPSLSPIMPAGERTAGAHFSWTTEGKYQ
HHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCC
KDQLVYMELSGSYKRYHAPLTRTVFIGKPPEKVRETAKIVIEGLNVALSTIKPGVTCEEV
CCEEEEEEECCCCCEECCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
EQAWQTTINQYGLEKESRMGYTVGLSYPPVWTENTAYFKPGEKTVLKPNMTFHIMPGMWL
HHHHHHHHHHHCCCCHHCCCEEEECCCCCCCCCCCEEECCCCCEEECCCCEEEECCCCEE
DGYGVAITETIRVTENGCETITKFPRELFIK
CCCCEEEEEEEEECCCHHHHHHHCHHHHCCC
>Mature Secondary Structure
MLPFEKTEYQHREKRIKKSMEAQGIEVLFVTDPANMNYITGYDALSYYVPQGVIVSSYLK
CCCCCCHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCEEECCHHHHHHCCCCHHHHHHHC
EPICIIRQQDVYCALHTTWMSKESIIPYPDKYLWEPKVLHVMDFVGDVLREKGLHNKRIG
CCEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCC
VELDSYYFNAHWYHRLEKSLPDAELVDATSLVNWIRGQKSTKELEYMQIAARIVEKAMYN
EEEECEEECHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
AIENIDVGVRECRVAAGIYSDLLNGTGVYGGEYPSLSPIMPAGERTAGAHFSWTTEGKYQ
HHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCC
KDQLVYMELSGSYKRYHAPLTRTVFIGKPPEKVRETAKIVIEGLNVALSTIKPGVTCEEV
CCEEEEEEECCCCCEECCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
EQAWQTTINQYGLEKESRMGYTVGLSYPPVWTENTAYFKPGEKTVLKPNMTFHIMPGMWL
HHHHHHHHHHHCCCCHHCCCEEEECCCCCCCCCCCEEECCCCCEEECCCCEEEECCCCEE
DGYGVAITETIRVTENGCETITKFPRELFIK
CCCCEEEEEEEEECCCHHHHHHHCHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]