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The map label for this gene is sigX [H]

Identifier: 138895828

GI number: 138895828

Start: 2313054

End: 2313599

Strand: Reverse

Name: sigX [H]

Synonym: GTNG_2187

Alternate gene names: 138895828

Gene position: 2313599-2313054 (Counterclockwise)

Preceding gene: 138895829

Following gene: 138895827

Centisome position: 65.17

GC content: 51.47

Gene sequence:

>546_bases
ATGGACCCCGTCTTTGAACAGTTGTATGAAAAGTATCATGACGATTTGTTTAATTTTTTGTTTTACATGGTGCGGAATCG
AGAGCATGCCGAAGATTTGGTCCAAGAAGTGTACGTGAAAGTGCTGCGTTCGTATAAGCGGTTTAAAGGGCAATGCAGTG
AAAAAACGTGGCTGCTGTCCATTGCGCGCCATGTGGCGATCGATTTTTTCCGCCGGCAAAAACATCGGCGCAAATGGGCT
GGTCCGCCGGAATGGAGCGAAGAGTCGATCGGCGCCGATGAACCGATGCCGGAGGAGGTTGCCATTCAAAAGGAGGAAAT
TCAGCTCATGTATCGCTGTTTGGCGCGCTGTACGGTCGATCAGCAGCTTGTGCTCGTCCTCCGATTCATCCAGTCGCTGT
CGATCGCGGAAACGGCAGCAGCGCTTGGCTGGACGGAGAGCAAAGTAAAAACGACGCAACACCGCGCGTTAAAGGCGCTG
AAGCAATATATGGAGGAAGAGGCAGAACGGGAGGGGTGGCAACATGAAAAAGCTCAACTGGAATGA

Upstream 100 bases:

>100_bases
AGATAAAAAACAGTTTCCTTTTTGTTTTCCACCCGTTATCATGAAGATAATGGGATTTTTTTGGTTTCGGTCCATGGTAA
AGGATAGGGGGAGAGAGACG

Downstream 100 bases:

>100_bases
GCGATGTATTCAACACGGACTTGAACAGTTGCCCGTTGTCAAAGACCGCCGCGCGAAAGAGGATATTTACGAGCGGCTAG
AGCGCGCCCGACGAGCGGCA

Product: RNA polymerase sigma factor SigX

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 181; Mature: 181

Protein sequence:

>181_residues
MDPVFEQLYEKYHDDLFNFLFYMVRNREHAEDLVQEVYVKVLRSYKRFKGQCSEKTWLLSIARHVAIDFFRRQKHRRKWA
GPPEWSEESIGADEPMPEEVAIQKEEIQLMYRCLARCTVDQQLVLVLRFIQSLSIAETAAALGWTESKVKTTQHRALKAL
KQYMEEEAEREGWQHEKAQLE

Sequences:

>Translated_181_residues
MDPVFEQLYEKYHDDLFNFLFYMVRNREHAEDLVQEVYVKVLRSYKRFKGQCSEKTWLLSIARHVAIDFFRRQKHRRKWA
GPPEWSEESIGADEPMPEEVAIQKEEIQLMYRCLARCTVDQQLVLVLRFIQSLSIAETAAALGWTESKVKTTQHRALKAL
KQYMEEEAEREGWQHEKAQLE
>Mature_181_residues
MDPVFEQLYEKYHDDLFNFLFYMVRNREHAEDLVQEVYVKVLRSYKRFKGQCSEKTWLLSIARHVAIDFFRRQKHRRKWA
GPPEWSEESIGADEPMPEEVAIQKEEIQLMYRCLARCTVDQQLVLVLRFIQSLSIAETAAALGWTESKVKTTQHRALKAL
KQYMEEEAEREGWQHEKAQLE

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. May be involved in the regulation of iron metabolism [H]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 21625; Mature: 21625

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS01063 SIGMA70_ECF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDPVFEQLYEKYHDDLFNFLFYMVRNREHAEDLVQEVYVKVLRSYKRFKGQCSEKTWLLS
CCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
IARHVAIDFFRRQKHRRKWAGPPEWSEESIGADEPMPEEVAIQKEEIQLMYRCLARCTVD
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCH
QQLVLVLRFIQSLSIAETAAALGWTESKVKTTQHRALKALKQYMEEEAEREGWQHEKAQL
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCC
E
C
>Mature Secondary Structure
MDPVFEQLYEKYHDDLFNFLFYMVRNREHAEDLVQEVYVKVLRSYKRFKGQCSEKTWLLS
CCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
IARHVAIDFFRRQKHRRKWAGPPEWSEESIGADEPMPEEVAIQKEEIQLMYRCLARCTVD
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCH
QQLVLVLRFIQSLSIAETAAALGWTESKVKTTQHRALKALKQYMEEEAEREGWQHEKAQL
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCC
E
C

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7934829; 9384377; 8052622; 9393439 [H]