Click here to switch to the map view.

The map label for this gene is yagI [H]

Identifier: 138895519

GI number: 138895519

Start: 1991555

End: 1992331

Strand: Reverse

Name: yagI [H]

Synonym: GTNG_1867

Alternate gene names: 138895519

Gene position: 1992331-1991555 (Counterclockwise)

Preceding gene: 138895520

Following gene: 138895518

Centisome position: 56.12

GC content: 42.47

Gene sequence:

>777_bases
TTGCCATTAATCCAAGCAGTCGATCGAGCTCTTCGTATTTTAGATTTGTTCGACGAGTACGAGACTGAACTCAAAATTAC
CGATATTAGTGAACGTATGCAGCTTCATAAAAGCACGGTACATTCGTTGCTGAAAACGCTGCAGCACCACCATTATATTG
AGCAAAATCCAGAGAACGGAAAATATCGGTTAGGCATGAAGCTGTTTGAGAGAGGAAACTTAGTGATTCGTCATCTCGAT
ATTCGCTCTGTTTCCAAGAAATATTTAATTGACATTTCGATGAAAACAGGGAACACGGTGCATCTTGTTATTCTCGATGG
AAAAGAAGGAATTTATATCGACAAGGTAGAGGGAACGTCCGGAACAGTTTTGTACTCAAGAATTGGAAGGAGAGTTCCTA
TTCACAGCAGTGCGGTAGGAAAGGTGCTGGTGGCCTTCAAAAGTGATAAGGAACTTAAAGAACTTTTAAATGGCTATGTG
TATAAGCGCCATACCGCCAATACAATTACTAGTGAAGAGGAATTCCTTAAAGAACTCGAACGAGTTCGGAGCAGCGGCTA
TGCTTTGGATAGAGAGGAAAATGAACCGGGAATTACTTGTGTCGCTGTTCCGATTCGTGACCATTCGAGGAATGTTATTG
CAGCGATCAGCATGTCCCAGCCTTCTGCCAAAGTAAATGATACTGTGCTAAACGAAGAAATTCAGCTGCTGCAAAGGGCA
GCGGAACAGATCTCGACAGAAATGGGATATGTCCAACATGGCCATTTGTCTGTGTAA

Upstream 100 bases:

>100_bases
GAAGTGATTCGAGCTTTTCACCCTCCTGTATTATAATAGAACCAAGGCAAATTCCCTGATTGCATAGTCCGCAAAACTTC
TAGAAAAGAGGGTGAAAGCA

Downstream 100 bases:

>100_bases
TATGGCCATTTCTTTCTAACAAAATGATAAAACAGAGTTTTTTAATATAAAACAAGTAATAAGGGGAGAGGCTTTATGAG
AGTGATTCGCTATGTCGAGG

Product: IclR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 258; Mature: 257

Protein sequence:

>258_residues
MPLIQAVDRALRILDLFDEYETELKITDISERMQLHKSTVHSLLKTLQHHHYIEQNPENGKYRLGMKLFERGNLVIRHLD
IRSVSKKYLIDISMKTGNTVHLVILDGKEGIYIDKVEGTSGTVLYSRIGRRVPIHSSAVGKVLVAFKSDKELKELLNGYV
YKRHTANTITSEEEFLKELERVRSSGYALDREENEPGITCVAVPIRDHSRNVIAAISMSQPSAKVNDTVLNEEIQLLQRA
AEQISTEMGYVQHGHLSV

Sequences:

>Translated_258_residues
MPLIQAVDRALRILDLFDEYETELKITDISERMQLHKSTVHSLLKTLQHHHYIEQNPENGKYRLGMKLFERGNLVIRHLD
IRSVSKKYLIDISMKTGNTVHLVILDGKEGIYIDKVEGTSGTVLYSRIGRRVPIHSSAVGKVLVAFKSDKELKELLNGYV
YKRHTANTITSEEEFLKELERVRSSGYALDREENEPGITCVAVPIRDHSRNVIAAISMSQPSAKVNDTVLNEEIQLLQRA
AEQISTEMGYVQHGHLSV
>Mature_257_residues
PLIQAVDRALRILDLFDEYETELKITDISERMQLHKSTVHSLLKTLQHHHYIEQNPENGKYRLGMKLFERGNLVIRHLDI
RSVSKKYLIDISMKTGNTVHLVILDGKEGIYIDKVEGTSGTVLYSRIGRRVPIHSSAVGKVLVAFKSDKELKELLNGYVY
KRHTANTITSEEEFLKELERVRSSGYALDREENEPGITCVAVPIRDHSRNVIAAISMSQPSAKVNDTVLNEEIQLLQRAA
EQISTEMGYVQHGHLSV

Specific function: Unknown

COG id: COG1414

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 iclR-ED (iclR effector binding) domain [H]

Homologues:

Organism=Escherichia coli, GI1786468, Length=250, Percent_Identity=55.2, Blast_Score=290, Evalue=4e-80,
Organism=Escherichia coli, GI1788131, Length=247, Percent_Identity=39.6761133603239, Blast_Score=181, Evalue=4e-47,
Organism=Escherichia coli, GI1786715, Length=249, Percent_Identity=30.5220883534137, Blast_Score=139, Evalue=1e-34,
Organism=Escherichia coli, GI1789999, Length=251, Percent_Identity=32.2709163346614, Blast_Score=134, Evalue=5e-33,
Organism=Escherichia coli, GI1790752, Length=224, Percent_Identity=32.5892857142857, Blast_Score=129, Evalue=2e-31,
Organism=Escherichia coli, GI87082359, Length=248, Percent_Identity=28.2258064516129, Blast_Score=124, Evalue=7e-30,
Organism=Escherichia coli, GI1788581, Length=224, Percent_Identity=26.3392857142857, Blast_Score=98, Evalue=6e-22,
Organism=Escherichia coli, GI145693096, Length=230, Percent_Identity=26.5217391304348, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014757
- InterPro:   IPR005471
- InterPro:   IPR011991 [H]

Pfam domain/function: PF09339 HTH_IclR; PF01614 IclR [H]

EC number: NA

Molecular weight: Translated: 29329; Mature: 29198

Theoretical pI: Translated: 7.47; Mature: 7.47

Prosite motif: PS51077 HTH_ICLR ; PS51078 ICLR_ED

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLIQAVDRALRILDLFDEYETELKITDISERMQLHKSTVHSLLKTLQHHHYIEQNPENG
CCHHHHHHHHHHHHHHHHHHCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
KYRLGMKLFERGNLVIRHLDIRSVSKKYLIDISMKTGNTVHLVILDGKEGIYIDKVEGTS
EEEECHHHHHCCCEEEEEECHHHCCCEEEEEEEECCCCEEEEEEEECCCCEEEEEECCCC
GTVLYSRIGRRVPIHSSAVGKVLVAFKSDKELKELLNGYVYKRHTANTITSEEEFLKELE
CEEHHHHHCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHEEEECCCCCCCCHHHHHHHHH
RVRSSGYALDREENEPGITCVAVPIRDHSRNVIAAISMSQPSAKVNDTVLNEEIQLLQRA
HHHHCCCEECCCCCCCCEEEEEEEECCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHH
AEQISTEMGYVQHGHLSV
HHHHHHHHCCEECCCCCC
>Mature Secondary Structure 
PLIQAVDRALRILDLFDEYETELKITDISERMQLHKSTVHSLLKTLQHHHYIEQNPENG
CHHHHHHHHHHHHHHHHHHCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
KYRLGMKLFERGNLVIRHLDIRSVSKKYLIDISMKTGNTVHLVILDGKEGIYIDKVEGTS
EEEECHHHHHCCCEEEEEECHHHCCCEEEEEEEECCCCEEEEEEEECCCCEEEEEECCCC
GTVLYSRIGRRVPIHSSAVGKVLVAFKSDKELKELLNGYVYKRHTANTITSEEEFLKELE
CEEHHHHHCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHEEEECCCCCCCCHHHHHHHHH
RVRSSGYALDREENEPGITCVAVPIRDHSRNVIAAISMSQPSAKVNDTVLNEEIQLLQRA
HHHHCCCEECCCCCCCCEEEEEEEECCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHH
AEQISTEMGYVQHGHLSV
HHHHHHHHCCEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]