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The map label for this gene is hfq [H]

Identifier: 138894832

GI number: 138894832

Start: 1237570

End: 1237848

Strand: Direct

Name: hfq [H]

Synonym: GTNG_1168

Alternate gene names: 138894832

Gene position: 1237570-1237848 (Clockwise)

Preceding gene: 138894831

Following gene: 138894833

Centisome position: 34.86

GC content: 42.29

Gene sequence:

>279_bases
TTGAAGCGAATATATAACCATATCCTTAGAGAGAAAAGAGGAGGACGTTCCATGAAAAATACGATCAACATTCAAGACCA
GTTTTTAAACCAGTTGCGCAAAGAAGGTATCCAAGTAACGGTGTTCTTATTGAACGGCTTCCAGCTGCGCGGATACATTA
AAGGATTTGATAACTTCACCGTGTTGCTTGAAGTGCAAGGAAAACAGCAGCTCATCTACAAACATGCCATTTCGACGTTT
GCGCCGGAACGGAACATCCAGTTTGAAACCGAGCAATGA

Upstream 100 bases:

>100_bases
CGCAACCAAATGCCGGTAGAATGGTTTGACATGACGGATCCCGAAAAGTTTGCCGTCAAGGTGGAGGAAATTTTTCGCTA
CATAGCAGGAAAGCTTCGAC

Downstream 100 bases:

>100_bases
TGCCGCTGGTACATAAGCCGCGACAAAAAAGACGCCTCCTTTGGGGCGTCTTTTTCCGTATTTCTCGACTTGCACCGCCC
TCTCTCCTGCTTTTTTGCCC

Product: RNA-binding protein Hfq

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 92; Mature: 92

Protein sequence:

>92_residues
MKRIYNHILREKRGGRSMKNTINIQDQFLNQLRKEGIQVTVFLLNGFQLRGYIKGFDNFTVLLEVQGKQQLIYKHAISTF
APERNIQFETEQ

Sequences:

>Translated_92_residues
MKRIYNHILREKRGGRSMKNTINIQDQFLNQLRKEGIQVTVFLLNGFQLRGYIKGFDNFTVLLEVQGKQQLIYKHAISTF
APERNIQFETEQ
>Mature_92_residues
MKRIYNHILREKRGGRSMKNTINIQDQFLNQLRKEGIQVTVFLLNGFQLRGYIKGFDNFTVLLEVQGKQQLIYKHAISTF
APERNIQFETEQ

Specific function: RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs [H]

COG id: COG1923

COG function: function code R; Uncharacterized host factor I protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hfq family [H]

Homologues:

Organism=Escherichia coli, GI1790614, Length=68, Percent_Identity=44.1176470588235, Blast_Score=69, Evalue=4e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005001
- InterPro:   IPR010920
- InterPro:   IPR001163 [H]

Pfam domain/function: PF01423 LSM [H]

EC number: NA

Molecular weight: Translated: 10902; Mature: 10902

Theoretical pI: Translated: 10.59; Mature: 10.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRIYNHILREKRGGRSMKNTINIQDQFLNQLRKEGIQVTVFLLNGFQLRGYIKGFDNFT
CHHHHHHHHHHCCCCCCCHHEECHHHHHHHHHHHCCCEEEEEEECCEEEEEEEECCCCEE
VLLEVQGKQQLIYKHAISTFAPERNIQFETEQ
EEEEECCCHHHHHHHHHHHCCCCCCEEEECCC
>Mature Secondary Structure
MKRIYNHILREKRGGRSMKNTINIQDQFLNQLRKEGIQVTVFLLNGFQLRGYIKGFDNFT
CHHHHHHHHHHCCCCCCCHHEECHHHHHHHHHHHCCCEEEEEEECCEEEEEEEECCCCEE
VLLEVQGKQQLIYKHAISTFAPERNIQFETEQ
EEEEECCCHHHHHHHHHHHCCCCCCEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA