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The map label for this gene is rbfA

Identifier: 138894785

GI number: 138894785

Start: 1182098

End: 1182484

Strand: Direct

Name: rbfA

Synonym: GTNG_1119

Alternate gene names: 138894785

Gene position: 1182098-1182484 (Clockwise)

Preceding gene: 138894784

Following gene: 138894786

Centisome position: 33.3

GC content: 50.9

Gene sequence:

>387_bases
ATGAACATACGGGCAACTCGCGTTGGTGAGCAAATGAAAAAAGAGTTAAGCGATATTATCGGCCGCAAGCTGAAAGATCC
GCGCATCGGCTTTGTCACCGTAACCGATGTGCGCGTCACCGGCGATTTGCAGCAAGCAAAAGTGTATATTAGCGTTTTCG
GTGACGACGAGCAACGGGAAAACACCCTAAAGGCGCTTGAGAAAGCAAAAGGGTTTATCCGCTCGGAAATCGGTCAGCGC
ATCCGTCTGCGCAAAACGCCGGAAATTTTGTTCGAAATCGATGAAACAATCGAATACGGCAGCCGGATCGAGCGGCTGAT
CCGGCAAATTTCCGACGAGGACGGCCGCGATTCCGAAGAGGTGAACGATGAACCGAAAAATGGATAG

Upstream 100 bases:

>100_bases
CGAGCGGGAACTTGAGCGGGCGCTGGCTTTGATCGACTCGTTTCCCGAATTGGAGCGGGCGGTGACATCATTTGAGTGGT
TGTAATCGAGGTGATGGGTG

Downstream 100 bases:

>100_bases
ACGAATCGTCTATCCATTGCCATTAGTGAGTATGACACGGAAAGGGTGCGCCGATGGACGGGGTATTGCTACTCAATAAA
CCGAAAGGGATGACGTCGCA

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 128; Mature: 128

Protein sequence:

>128_residues
MNIRATRVGEQMKKELSDIIGRKLKDPRIGFVTVTDVRVTGDLQQAKVYISVFGDDEQRENTLKALEKAKGFIRSEIGQR
IRLRKTPEILFEIDETIEYGSRIERLIRQISDEDGRDSEEVNDEPKNG

Sequences:

>Translated_128_residues
MNIRATRVGEQMKKELSDIIGRKLKDPRIGFVTVTDVRVTGDLQQAKVYISVFGDDEQRENTLKALEKAKGFIRSEIGQR
IRLRKTPEILFEIDETIEYGSRIERLIRQISDEDGRDSEEVNDEPKNG
>Mature_128_residues
MNIRATRVGEQMKKELSDIIGRKLKDPRIGFVTVTDVRVTGDLQQAKVYISVFGDDEQRENTLKALEKAKGFIRSEIGQR
IRLRKTPEILFEIDETIEYGSRIERLIRQISDEDGRDSEEVNDEPKNG

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family

Homologues:

Organism=Escherichia coli, GI1789558, Length=114, Percent_Identity=38.5964912280702, Blast_Score=84, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBFA_GEOTN (A4IMD9)

Other databases:

- EMBL:   CP000557
- RefSeq:   YP_001125238.1
- ProteinModelPortal:   A4IMD9
- SMR:   A4IMD9
- STRING:   A4IMD9
- GeneID:   4966060
- GenomeReviews:   CP000557_GR
- KEGG:   gtn:GTNG_1119
- NMPDR:   fig|420246.5.peg.1087
- eggNOG:   COG0858
- HOGENOM:   HBG751055
- OMA:   SIEYGNR
- PhylomeDB:   A4IMD9
- ProtClustDB:   PRK00521
- BioCyc:   GTHE420246:GTNG_1119-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00003
- InterPro:   IPR015946
- InterPro:   IPR000238
- InterPro:   IPR020053
- Gene3D:   G3DSA:3.30.300.20
- ProDom:   PD007327
- TIGRFAMs:   TIGR00082

Pfam domain/function: PF02033 RBFA; SSF89919 Rib_bd_factA

EC number: NA

Molecular weight: Translated: 14751; Mature: 14751

Theoretical pI: Translated: 5.11; Mature: 5.11

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIRATRVGEQMKKELSDIIGRKLKDPRIGFVTVTDVRVTGDLQQAKVYISVFGDDEQRE
CCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEECCHHHHEEEEEEECCCHHHH
NTLKALEKAKGFIRSEIGQRIRLRKTPEILFEIDETIEYGSRIERLIRQISDEDGRDSEE
HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
VNDEPKNG
CCCCCCCC
>Mature Secondary Structure
MNIRATRVGEQMKKELSDIIGRKLKDPRIGFVTVTDVRVTGDLQQAKVYISVFGDDEQRE
CCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEECCHHHHEEEEEEECCCHHHH
NTLKALEKAKGFIRSEIGQRIRLRKTPEILFEIDETIEYGSRIERLIRQISDEDGRDSEE
HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
VNDEPKNG
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA