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The map label for this gene is sigI [H]

Identifier: 138894489

GI number: 138894489

Start: 893046

End: 893786

Strand: Direct

Name: sigI [H]

Synonym: GTNG_0819

Alternate gene names: 138894489

Gene position: 893046-893786 (Clockwise)

Preceding gene: 138894488

Following gene: 138894490

Centisome position: 25.15

GC content: 45.34

Gene sequence:

>741_bases
ATGTTTGGCACATTATTAAAAAAAAGAGAGAGAACGCTTGAACGGACGGTTGCGGAAATTCAACAAGGGAATGAAGCGCT
GCGCAATGAACTCATCCAACAATATAAGCCGTTTATCGCTAAAACGGTCTCGGGCGTGTGCAAGCGATTCATTCATGAAG
AAGATGACGAAGCGAGCATCGGATTGATCGCTTTTAATGAGGCGATTGAAAAATATGCGCCACATAAAGGAGGCTCCTTC
CTCTCATTTGCCGAACTGCTCATTAAACGGCGCCTTATCGATTATATTCGGAAAGAGGCGAGAATACGAGATGCAGTATG
GTATACGGAGGATAGAGAAGACGGTGAGCAAACGGCGCAAGCGTACTTGGACGCTAAGCTTTCTGTCGATGAATTTTACA
AGCAAATCGAACAGGAGCAGCGTCGCGAAGAAATCATCCATTACCAGCAAGTGCTGAAACAATTCGGCATTCACTTTCAC
GATTTAGTTGAACATTCGCCAAAACATAAAGACGCCCGCCTAAATGCCATCCGTGTAGCCCAGCTGCTTGTGGAGAACGA
GGACTTGCTCGGTCTGTTGTTTCAAAAAAAACAGCTACCGATCAAACAGCTGGAAACGATGGCGTCCGTCAGCCGCAAAA
CTATAGAGAGAAACAGAAAATACATTATTGCGGTCGCGGTCATTTTGGCGGGCGATTATATTTACTTGAAGGACTATATA
AAAGGGGTGCTACCATCGTGA

Upstream 100 bases:

>100_bases
GAATAATTTTTTTCTTGAATGACGGCCATATTTCCCTTACGATATACGAAATAGTGTATAAGGAAGCGTCAGTCCGTCTT
GTATAAGCGGGGTGAAATCG

Downstream 100 bases:

>100_bases
AGAAGGGGATTGTGCTGGAATTGGACGAAGAGTTTGTCACCGTGTTGACGCCGGAGGGGGAATTTCTTCGGTTAAAAAAG
GAAGGAGATTGTGAAGTTGG

Product: putative RNA polymerase sigma factor SigI

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 246; Mature: 246

Protein sequence:

>246_residues
MFGTLLKKRERTLERTVAEIQQGNEALRNELIQQYKPFIAKTVSGVCKRFIHEEDDEASIGLIAFNEAIEKYAPHKGGSF
LSFAELLIKRRLIDYIRKEARIRDAVWYTEDREDGEQTAQAYLDAKLSVDEFYKQIEQEQRREEIIHYQQVLKQFGIHFH
DLVEHSPKHKDARLNAIRVAQLLVENEDLLGLLFQKKQLPIKQLETMASVSRKTIERNRKYIIAVAVILAGDYIYLKDYI
KGVLPS

Sequences:

>Translated_246_residues
MFGTLLKKRERTLERTVAEIQQGNEALRNELIQQYKPFIAKTVSGVCKRFIHEEDDEASIGLIAFNEAIEKYAPHKGGSF
LSFAELLIKRRLIDYIRKEARIRDAVWYTEDREDGEQTAQAYLDAKLSVDEFYKQIEQEQRREEIIHYQQVLKQFGIHFH
DLVEHSPKHKDARLNAIRVAQLLVENEDLLGLLFQKKQLPIKQLETMASVSRKTIERNRKYIIAVAVILAGDYIYLKDYI
KGVLPS
>Mature_246_residues
MFGTLLKKRERTLERTVAEIQQGNEALRNELIQQYKPFIAKTVSGVCKRFIHEEDDEASIGLIAFNEAIEKYAPHKGGSF
LSFAELLIKRRLIDYIRKEARIRDAVWYTEDREDGEQTAQAYLDAKLSVDEFYKQIEQEQRREEIIHYQQVLKQFGIHFH
DLVEHSPKHKDARLNAIRVAQLLVENEDLLGLLFQKKQLPIKQLETMASVSRKTIERNRKYIIAVAVILAGDYIYLKDYI
KGVLPS

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor plays a role in survival at low temperatures and could be involved in heat shock stress response, posi

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014244
- InterPro:   IPR007627
- InterPro:   IPR013325 [H]

Pfam domain/function: PF04542 Sigma70_r2 [H]

EC number: NA

Molecular weight: Translated: 28719; Mature: 28719

Theoretical pI: Translated: 8.38; Mature: 8.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFGTLLKKRERTLERTVAEIQQGNEALRNELIQQYKPFIAKTVSGVCKRFIHEEDDEASI
CCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
GLIAFNEAIEKYAPHKGGSFLSFAELLIKRRLIDYIRKEARIRDAVWYTEDREDGEQTAQ
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
AYLDAKLSVDEFYKQIEQEQRREEIIHYQQVLKQFGIHFHDLVEHSPKHKDARLNAIRVA
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCHHHHHHHHHH
QLLVENEDLLGLLFQKKQLPIKQLETMASVSRKTIERNRKYIIAVAVILAGDYIYLKDYI
HHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHH
KGVLPS
HHCCCC
>Mature Secondary Structure
MFGTLLKKRERTLERTVAEIQQGNEALRNELIQQYKPFIAKTVSGVCKRFIHEEDDEASI
CCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
GLIAFNEAIEKYAPHKGGSFLSFAELLIKRRLIDYIRKEARIRDAVWYTEDREDGEQTAQ
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
AYLDAKLSVDEFYKQIEQEQRREEIIHYQQVLKQFGIHFHDLVEHSPKHKDARLNAIRVA
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCHHHHHHHHHH
QLLVENEDLLGLLFQKKQLPIKQLETMASVSRKTIERNRKYIIAVAVILAGDYIYLKDYI
HHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHH
KGVLPS
HHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]