Click here to switch to the map view.

The map label for this gene is yabF [H]

Identifier: 138893713

GI number: 138893713

Start: 46671

End: 47210

Strand: Direct

Name: yabF [H]

Synonym: GTNG_0034

Alternate gene names: 138893713

Gene position: 46671-47210 (Clockwise)

Preceding gene: 138893712

Following gene: 138893714

Centisome position: 1.31

GC content: 52.96

Gene sequence:

>540_bases
GTGGAAGGAAAAGATGATACAGCGGCGATCCGACGTGCCGTTGATGCCGATACAATCGAAACCAATGGAGCCGCAGTAGG
GATGGATGTCATTGAACGAATTAAGCTGGCAAAAGAACGGCGCGGCGTGATTATTTTTACCGATCCAGATTTCCCTGGTG
AAAAGATTCGCCGGACGATTGCCGAGCAGGTGCCGGGATGCAAACATGCATTTTTGTCGCGCGAAGCGGCAAAAGCGAAA
AACGGCAAAGGCGTTGGGGTCGAGCATGCCTCTCCCGATGAAATTCGCCAAGCGCTCGCCAACGTATATGAAGAGGTGGC
GGATTGGCAAGAAGAAATTACATTTGCCGAGTTGATCGAGGCCGGATTAGTCGGTGGAGAGATGGCGCGTCGTCGACGGT
TGCGCCTTGGGGAGGAGCTGAAAATCGGCTATGCCAACGGCCGACAGTTTCATAAGCGGCTAAAAGTGTTCCGTATTTCT
CGAGATGCCTTTTATGCGGCGTTGGCACAAGTGATGCAGGAGGAGGCAGGCGATGCATAA

Upstream 100 bases:

>100_bases
TATTTATTTTACCGGAAAGGAGGCATTGCAGAAATAGGAAAAAACTCTTATTCCGCCATATTTCTGCAATGATGTGATGA
AAATTAAGGAAGTCATTGTC

Downstream 100 bases:

>100_bases
AGATATTGCGACACCGGGGCGGACGAAAGAAATTTTGGCACGGTACGGCTTTTCGTTTAAAAAGAGCCTCGGACAAAACT
TTTTAATCGATACGAATATT

Product: ribonuclease M5

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 179; Mature: 179

Protein sequence:

>179_residues
MEGKDDTAAIRRAVDADTIETNGAAVGMDVIERIKLAKERRGVIIFTDPDFPGEKIRRTIAEQVPGCKHAFLSREAAKAK
NGKGVGVEHASPDEIRQALANVYEEVADWQEEITFAELIEAGLVGGEMARRRRLRLGEELKIGYANGRQFHKRLKVFRIS
RDAFYAALAQVMQEEAGDA

Sequences:

>Translated_179_residues
MEGKDDTAAIRRAVDADTIETNGAAVGMDVIERIKLAKERRGVIIFTDPDFPGEKIRRTIAEQVPGCKHAFLSREAAKAK
NGKGVGVEHASPDEIRQALANVYEEVADWQEEITFAELIEAGLVGGEMARRRRLRLGEELKIGYANGRQFHKRLKVFRIS
RDAFYAALAQVMQEEAGDA
>Mature_179_residues
MEGKDDTAAIRRAVDADTIETNGAAVGMDVIERIKLAKERRGVIIFTDPDFPGEKIRRTIAEQVPGCKHAFLSREAAKAK
NGKGVGVEHASPDEIRQALANVYEEVADWQEEITFAELIEAGLVGGEMARRRRLRLGEELKIGYANGRQFHKRLKVFRIS
RDAFYAALAQVMQEEAGDA

Specific function: Unknown

COG id: COG1658

COG function: function code L; Small primase-like proteins (Toprim domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Toprim domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004466
- InterPro:   IPR006171 [H]

Pfam domain/function: PF01751 Toprim [H]

EC number: NA

Molecular weight: Translated: 19868; Mature: 19868

Theoretical pI: Translated: 6.30; Mature: 6.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEGKDDTAAIRRAVDADTIETNGAAVGMDVIERIKLAKERRGVIIFTDPDFPGEKIRRTI
CCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHH
AEQVPGCKHAFLSREAAKAKNGKGVGVEHASPDEIRQALANVYEEVADWQEEITFAELIE
HHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AGLVGGEMARRRRLRLGEELKIGYANGRQFHKRLKVFRISRDAFYAALAQVMQEEAGDA
HHCCCHHHHHHHHHCCCCHHEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MEGKDDTAAIRRAVDADTIETNGAAVGMDVIERIKLAKERRGVIIFTDPDFPGEKIRRTI
CCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHH
AEQVPGCKHAFLSREAAKAKNGKGVGVEHASPDEIRQALANVYEEVADWQEEITFAELIE
HHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AGLVGGEMARRRRLRLGEELKIGYANGRQFHKRLKVFRISRDAFYAALAQVMQEEAGDA
HHCCCHHHHHHHHHCCCCHHEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]