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The map label for this gene is yrbE [H]

Identifier: 13488315

GI number: 13488315

Start: 337749

End: 338879

Strand: Direct

Name: yrbE [H]

Synonym: mlr9380

Alternate gene names: 13488315

Gene position: 337749-338879 (Clockwise)

Preceding gene: 13488314

Following gene: 13488316

Centisome position: 95.98

GC content: 60.48

Gene sequence:

>1131_bases
ATGAGTTCGAAACATATTCGGCTCGGCATCGTGGGGGCCGGCCTTTGGGCTGCGCGAGCACATCTGCCGGCATTTGCCCG
CATCGGCGGAGTTAAGATCGTCGGCATCGCGGACCCCAATACCGATCGAGCGCGGGAGCTTGCCAGCCGTTTTGGTATAC
CCAGCGTCTACGACAATCACGAAGACCTGCTCGCCGGCGGTGTGGACGCCGTCACGATTGCTGTGCCTGTTGACCAGCAT
TTCCAGATAGCGTCTGCGGCGCTGCGCCGGGGGGTGCATGTACTGTGCGAAAAGCCACTGGCGCGCACGGTTGACGAAGC
TGCGACACTGAAGGAGATGGCCGGGTCAGCCGGAGTGGTTGATTGCATGGGCTTTATGTTGCGCTTCAGCCCAGCCTTCC
TTCAGTTGCAGGAGCTGCTTGAAAGTGGTGCTGTGGGTCCAATTCACAGCATCCTTTACCATTCGCATTTTGCTCAGTTC
TTCGATCCGCAGACGCCCTGCCACTGGACAATGAACGCCGAACGCACCGGCGGCGGCGTGTCAGTCGAATACGGCTGCCA
TGGTCTGGACCTCGCTCGATCCGTGGCCGGAGATATTACAGAATTGTGCGCCAATGCACGCACGCTTGTTCCCGAACGGC
CGGATGTCGGAGGCGCCATGCAGAAGGTCGACGTGGATGAAGTCTGCTCCTGGCTTGCCAACTTTTCCGGAGGGGCGGAG
GGCCTATTCCACGTCAGCTGGAGTTCCAGTCTTAGCTTTGGCGTCGAGTTCGCGGTCTTCGGTCAGAAAGGAGCTTTAGG
CTGGCGCAAGACCGAAAGCTGGCCGTTTTGCCAGGTTCTGTCAAGTATCGATCCCACGCGAGAGATGCAGCCGATCGAGA
TCGACCGGCGCTATACCGACCGTGTCGGTTGGGCGGAATCGTGGCGTGCTTGCTTCATGAGCGGCCTCGCCCATCAGTTC
ACCGCCGAGATCGCAGGGGCTCCTAGGCGCTCTCCGGGCTTTCACGACGGACTCGAAAGCCAGCGCGCCCTTAAAGCCAT
CGGCATTTCGCTCGCGGAACGGAGGTGGGTGAGCCTTGACGAAACCTCGGCGAGGTCGCGGGCCGATGAACGCAAATCGG
GGATCCTCTGA

Upstream 100 bases:

>100_bases
GTGATTTCGGCTTTGCGGCGGCGGCCGGCGTCCTGCTGATGGTGATTACACTTTTCTTGCTCAGTGCGGTGCAGTGGGTC
TTCAGGGCGGGGCAAAGACA

Downstream 100 bases:

>100_bases
TGTGGTCGGCGGAAAAATTGGCGGGCCTCATCACCGAATTTGATCCTTCGGTCATTTCGCAGGCCACGCGTGGAAAGGTA
TCCGATCTGGTCATTGACGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 376; Mature: 375

Protein sequence:

>376_residues
MSSKHIRLGIVGAGLWAARAHLPAFARIGGVKIVGIADPNTDRARELASRFGIPSVYDNHEDLLAGGVDAVTIAVPVDQH
FQIASAALRRGVHVLCEKPLARTVDEAATLKEMAGSAGVVDCMGFMLRFSPAFLQLQELLESGAVGPIHSILYHSHFAQF
FDPQTPCHWTMNAERTGGGVSVEYGCHGLDLARSVAGDITELCANARTLVPERPDVGGAMQKVDVDEVCSWLANFSGGAE
GLFHVSWSSSLSFGVEFAVFGQKGALGWRKTESWPFCQVLSSIDPTREMQPIEIDRRYTDRVGWAESWRACFMSGLAHQF
TAEIAGAPRRSPGFHDGLESQRALKAIGISLAERRWVSLDETSARSRADERKSGIL

Sequences:

>Translated_376_residues
MSSKHIRLGIVGAGLWAARAHLPAFARIGGVKIVGIADPNTDRARELASRFGIPSVYDNHEDLLAGGVDAVTIAVPVDQH
FQIASAALRRGVHVLCEKPLARTVDEAATLKEMAGSAGVVDCMGFMLRFSPAFLQLQELLESGAVGPIHSILYHSHFAQF
FDPQTPCHWTMNAERTGGGVSVEYGCHGLDLARSVAGDITELCANARTLVPERPDVGGAMQKVDVDEVCSWLANFSGGAE
GLFHVSWSSSLSFGVEFAVFGQKGALGWRKTESWPFCQVLSSIDPTREMQPIEIDRRYTDRVGWAESWRACFMSGLAHQF
TAEIAGAPRRSPGFHDGLESQRALKAIGISLAERRWVSLDETSARSRADERKSGIL
>Mature_375_residues
SSKHIRLGIVGAGLWAARAHLPAFARIGGVKIVGIADPNTDRARELASRFGIPSVYDNHEDLLAGGVDAVTIAVPVDQHF
QIASAALRRGVHVLCEKPLARTVDEAATLKEMAGSAGVVDCMGFMLRFSPAFLQLQELLESGAVGPIHSILYHSHFAQFF
DPQTPCHWTMNAERTGGGVSVEYGCHGLDLARSVAGDITELCANARTLVPERPDVGGAMQKVDVDEVCSWLANFSGGAEG
LFHVSWSSSLSFGVEFAVFGQKGALGWRKTESWPFCQVLSSIDPTREMQPIEIDRRYTDRVGWAESWRACFMSGLAHQFT
AEIAGAPRRSPGFHDGLESQRALKAIGISLAERRWVSLDETSARSRADERKSGIL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gfo/idh/mocA family [H]

Homologues:

Organism=Escherichia coli, GI1787574, Length=200, Percent_Identity=31.5, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI87081947, Length=209, Percent_Identity=28.7081339712919, Blast_Score=76, Evalue=5e-15,
Organism=Escherichia coli, GI1787307, Length=141, Percent_Identity=32.6241134751773, Blast_Score=72, Evalue=4e-14,
Organism=Drosophila melanogaster, GI24581117, Length=270, Percent_Identity=26.6666666666667, Blast_Score=81, Evalue=1e-15,
Organism=Drosophila melanogaster, GI24581115, Length=307, Percent_Identity=25.4071661237785, Blast_Score=71, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR000683
- InterPro:   IPR004104 [H]

Pfam domain/function: PF01408 GFO_IDH_MocA; PF02894 GFO_IDH_MocA_C [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 40788; Mature: 40656

Theoretical pI: Translated: 6.57; Mature: 6.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSKHIRLGIVGAGLWAARAHLPAFARIGGVKIVGIADPNTDRARELASRFGIPSVYDNH
CCCCEEEEEEEECCHHHHHHHCCHHHHHCCEEEEEECCCCHHHHHHHHHHCCCCCCCCCC
EDLLAGGVDAVTIAVPVDQHFQIASAALRRGVHVLCEKPLARTVDEAATLKEMAGSAGVV
HHHHHCCCCEEEEEECCCHHHHHHHHHHHCCHHHHHCCHHHHHHHHHHHHHHHCCCCCHH
DCMGFMLRFSPAFLQLQELLESGAVGPIHSILYHSHFAQFFDPQTPCHWTMNAERTGGGV
HHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCE
SVEYGCHGLDLARSVAGDITELCANARTLVPERPDVGGAMQKVDVDEVCSWLANFSGGAE
EEECCCCHHHHHHHHHHHHHHHHCCCHHCCCCCCCCCCHHHHCCHHHHHHHHHHCCCCCC
GLFHVSWSSSLSFGVEFAVFGQKGALGWRKTESWPFCQVLSSIDPTREMQPIEIDRRYTD
CEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHH
RVGWAESWRACFMSGLAHQFTAEIAGAPRRSPGFHDGLESQRALKAIGISLAERRWVSLD
HCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
ETSARSRADERKSGIL
HHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SSKHIRLGIVGAGLWAARAHLPAFARIGGVKIVGIADPNTDRARELASRFGIPSVYDNH
CCCEEEEEEEECCHHHHHHHCCHHHHHCCEEEEEECCCCHHHHHHHHHHCCCCCCCCCC
EDLLAGGVDAVTIAVPVDQHFQIASAALRRGVHVLCEKPLARTVDEAATLKEMAGSAGVV
HHHHHCCCCEEEEEECCCHHHHHHHHHHHCCHHHHHCCHHHHHHHHHHHHHHHCCCCCHH
DCMGFMLRFSPAFLQLQELLESGAVGPIHSILYHSHFAQFFDPQTPCHWTMNAERTGGGV
HHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCE
SVEYGCHGLDLARSVAGDITELCANARTLVPERPDVGGAMQKVDVDEVCSWLANFSGGAE
EEECCCCHHHHHHHHHHHHHHHHCCCHHCCCCCCCCCCHHHHCCHHHHHHHHHHCCCCCC
GLFHVSWSSSLSFGVEFAVFGQKGALGWRKTESWPFCQVLSSIDPTREMQPIEIDRRYTD
CEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHH
RVGWAESWRACFMSGLAHQFTAEIAGAPRRSPGFHDGLESQRALKAIGISLAERRWVSLD
HCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
ETSARSRADERKSGIL
HHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377; 9025289 [H]