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The map label for this gene is cspG [H]

Identifier: 13488214

GI number: 13488214

Start: 85565

End: 85858

Strand: Direct

Name: cspG [H]

Synonym: mlr9108

Alternate gene names: 13488214

Gene position: 85565-85858 (Clockwise)

Preceding gene: 13488349

Following gene: 13488350

Centisome position: 24.31

GC content: 61.22

Gene sequence:

>294_bases
GTGCTGGAGATCGGCGATCCGATCGCGAAAACTCCCTCGCATACGCGCGTCGCTGGAGAGACGAGCGTCGAGACGGGCGC
GCAGCCAGAGAGCGGGGGCACGGTCAAGTGGTACAAACCCGAAAAGGGCTTCGGCTTCATAGCTCCTGACAACGGTGAGA
AGGACGTCTTCGTTCATGCCAGCACCCTAACCCGTTCAGGGCTCAGTGCGCTGGTGGAGGGACAGAAGGTGTTTGTCGCA
TGCGGGCAAGGCAAGAAGGGCTTGGAAGTCCGGAGCATTCGCCTCGCCTGGTAA

Upstream 100 bases:

>100_bases
CGTCCGGGTGCTAGAGGCGGCCGGATGCCGGGAGGTTGCCGAGGGAACGCCTCTCAAGGTCACGGTCGAAAAAAGTCCGA
AAGGTCATCAAGTCGCCCAG

Downstream 100 bases:

>100_bases
AAATTGAGCCCGATTAAGATGCCGATATCGGCCAAGCTCGCACCGAGACTTTGGCTAGGCTGTGGCGCAACGGCCGCTAT
GCTCTCAAACTGAAAGGGCG

Product: cold-shock protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 97; Mature: 97

Protein sequence:

>97_residues
MLEIGDPIAKTPSHTRVAGETSVETGAQPESGGTVKWYKPEKGFGFIAPDNGEKDVFVHASTLTRSGLSALVEGQKVFVA
CGQGKKGLEVRSIRLAW

Sequences:

>Translated_97_residues
MLEIGDPIAKTPSHTRVAGETSVETGAQPESGGTVKWYKPEKGFGFIAPDNGEKDVFVHASTLTRSGLSALVEGQKVFVA
CGQGKKGLEVRSIRLAW
>Mature_97_residues
MLEIGDPIAKTPSHTRVAGETSVETGAQPESGGTVKWYKPEKGFGFIAPDNGEKDVFVHASTLTRSGLSALVEGQKVFVA
CGQGKKGLEVRSIRLAW

Specific function: Binds To And Stimulates The Transcription Of The CCAAT- Containing, Cold-Shock-Inducible Promoters Of The H-Ns And Gyra Proteins. Binds Also To The Inverted Repeat 5'-ATTGG-3'. [C]

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1789979, Length=55, Percent_Identity=54.5454545454545, Blast_Score=65, Evalue=9e-13,
Organism=Escherichia coli, GI2367114, Length=55, Percent_Identity=49.0909090909091, Blast_Score=62, Evalue=5e-12,
Organism=Escherichia coli, GI1786841, Length=55, Percent_Identity=50.9090909090909, Blast_Score=62, Evalue=6e-12,
Organism=Escherichia coli, GI1787834, Length=55, Percent_Identity=50.9090909090909, Blast_Score=61, Evalue=1e-11,
Organism=Escherichia coli, GI1787839, Length=55, Percent_Identity=50.9090909090909, Blast_Score=61, Evalue=1e-11,
Organism=Escherichia coli, GI1788126, Length=55, Percent_Identity=50.9090909090909, Blast_Score=59, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 10315; Mature: 10315

Theoretical pI: Translated: 8.51; Mature: 8.51

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLEIGDPIAKTPSHTRVAGETSVETGAQPESGGTVKWYKPEKGFGFIAPDNGEKDVFVHA
CCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCEEEEECCCCCCEEECCCCCCCEEEEEE
STLTRSGLSALVEGQKVFVACGQGKKGLEVRSIRLAW
CCCCHHHHHHHCCCCEEEEEECCCCCCCEEEEEEECC
>Mature Secondary Structure
MLEIGDPIAKTPSHTRVAGETSVETGAQPESGGTVKWYKPEKGFGFIAPDNGEKDVFVHA
CCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCEEEEECCCCCCEEECCCCCCCEEEEEE
STLTRSGLSALVEGQKVFVACGQGKKGLEVRSIRLAW
CCCCHHHHHHHCCCCEEEEEECCCCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10483731 [H]