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The map label for this gene is xerD [H]

Identifier: 13488164

GI number: 13488164

Start: 313499

End: 314668

Strand: Reverse

Name: xerD [H]

Synonym: mll9356

Alternate gene names: 13488164

Gene position: 314668-313499 (Counterclockwise)

Preceding gene: 13488165

Following gene: 13488163

Centisome position: 89.42

GC content: 64.19

Gene sequence:

>1170_bases
ATGATGGACCGGAAAGCAGAGGGCGAACATACCGCCGGAGAAGACAAGGCCAGCGACGACCTGCCAGATATCGTCGACGT
GGTGATGGAAATGGGCCAAGCTCCCACCGATCCCCCCTCCCCTCCTCCGCAGCCGGCGTACCGGTCGCAGCCGGCGTCCA
GTTCGGAGCCAACGTTGGGCCTTCCGGCTCATCTGGAACGGCTCGCTGACCACGCGCGAAAATATGTCCAGGCGGCGAGC
TCCGCTAACACCCGCCGTGCCTACGCCGCCGACTGGAAGCACTTTGCCGCCTGGTGCAGGCGTCAGCATCTTGACCCCCT
GCCACCGGATCCGCAGATCGTCGGCCTTTACATCACCGCCTGCGCGTCCGGTAAGGGAACAGGAGACAAGAAACCGAACT
CCGTCTCAACGATCGAGCGACGTCTCTCCTCGCTGACCTGGAATTTTTCGCAGCGTGGCCAGCCGTTGGACAGAAAAGAC
CGGCATATCGCGACTGTGCTGGCCGGAATTCGCAACAGCCACGCCTCCCCTCCCCGGCAGAAAGAAGCCATTCTCCCCGA
GGATCTGATTGCCATGCTCGAAACGCTAGACCGCGGTGCCCTGCGGGGCCTGCGTGACCGCGGCATGCTGCTGTTGGGCT
TCGCCGGGGGCCTGCGCCGCTCCGAAATCGTCGGTCTCGACTGCGGCCGTGACCAGACCGAGGACGGTCGCGGCTGGATA
GAGATTCTCGACAAAGGGATTTTGGTGACCTTGCGCGGAAAGACCGGTTGGCGTGAGGTCGAGATCGGCCGCGGCTCGTC
GGATACTACCTGCCCCGTGGTCGCCCTGCAGACCTGGCTGAAACTCGCCCGCATCGCGCATGGACCGTTGTTTCGGCGTG
TCACGGGGCAGGGCAAGGCGATTGGTTCCGAGCGGCTCAACGACCAAGAAGTGGCGCGGCTGGTCAAGCGCGCGGCACTC
GCCGCCGGTGTTCGCGGGGATCTTTCCGAAGGCGAGCGTGCGACGAAGTTTTCGGGCCATTCGTTGCGCGCCGGCCTTGC
CTCGTCGGCTGAGGTCGACGAGCGCTACGTGCAAAAGCAGCTCGGCCACACCACCGCCGAAATGACCCGGCGCTATCAGC
GCCGAAGAGATCGATTCCGCGTCAATCTCACCAAGGCGAGTGGCCTTTAG

Upstream 100 bases:

>100_bases
TGAATATGGGCGATTGTTTCGCCTACGCCTGTGCCAGGCTGTACGGCATTCCGCTGCTATTCAAGGGCAATGATTTCGTG
CACACCGACATCGAGGTGGC

Downstream 100 bases:

>100_bases
TGGGGGGTCAGCGGCGGAATCTACGCGAGGCGGAGCGGCTTGCCCAGCGCGCCTGATGCTGCAGAGGAGTGTTGTGGCGC
GGACGCAAAAAGCGGGAGCG

Product: putative integrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 389; Mature: 389

Protein sequence:

>389_residues
MMDRKAEGEHTAGEDKASDDLPDIVDVVMEMGQAPTDPPSPPPQPAYRSQPASSSEPTLGLPAHLERLADHARKYVQAAS
SANTRRAYAADWKHFAAWCRRQHLDPLPPDPQIVGLYITACASGKGTGDKKPNSVSTIERRLSSLTWNFSQRGQPLDRKD
RHIATVLAGIRNSHASPPRQKEAILPEDLIAMLETLDRGALRGLRDRGMLLLGFAGGLRRSEIVGLDCGRDQTEDGRGWI
EILDKGILVTLRGKTGWREVEIGRGSSDTTCPVVALQTWLKLARIAHGPLFRRVTGQGKAIGSERLNDQEVARLVKRAAL
AAGVRGDLSEGERATKFSGHSLRAGLASSAEVDERYVQKQLGHTTAEMTRRYQRRRDRFRVNLTKASGL

Sequences:

>Translated_389_residues
MMDRKAEGEHTAGEDKASDDLPDIVDVVMEMGQAPTDPPSPPPQPAYRSQPASSSEPTLGLPAHLERLADHARKYVQAAS
SANTRRAYAADWKHFAAWCRRQHLDPLPPDPQIVGLYITACASGKGTGDKKPNSVSTIERRLSSLTWNFSQRGQPLDRKD
RHIATVLAGIRNSHASPPRQKEAILPEDLIAMLETLDRGALRGLRDRGMLLLGFAGGLRRSEIVGLDCGRDQTEDGRGWI
EILDKGILVTLRGKTGWREVEIGRGSSDTTCPVVALQTWLKLARIAHGPLFRRVTGQGKAIGSERLNDQEVARLVKRAAL
AAGVRGDLSEGERATKFSGHSLRAGLASSAEVDERYVQKQLGHTTAEMTRRYQRRRDRFRVNLTKASGL
>Mature_389_residues
MMDRKAEGEHTAGEDKASDDLPDIVDVVMEMGQAPTDPPSPPPQPAYRSQPASSSEPTLGLPAHLERLADHARKYVQAAS
SANTRRAYAADWKHFAAWCRRQHLDPLPPDPQIVGLYITACASGKGTGDKKPNSVSTIERRLSSLTWNFSQRGQPLDRKD
RHIATVLAGIRNSHASPPRQKEAILPEDLIAMLETLDRGALRGLRDRGMLLLGFAGGLRRSEIVGLDCGRDQTEDGRGWI
EILDKGILVTLRGKTGWREVEIGRGSSDTTCPVVALQTWLKLARIAHGPLFRRVTGQGKAIGSERLNDQEVARLVKRAAL
AAGVRGDLSEGERATKFSGHSLRAGLASSAEVDERYVQKQLGHTTAEMTRRYQRRRDRFRVNLTKASGL

Specific function: Site-Specific Tyrosine Recombinase, Which Acts By Catalyzing The Cutting And Rejoining Of The Recombining DNA Molecules. Binds Cooperatively To Specific DNA Consensus Sequences That Are Separated From Xerd Binding Sites By A Short Central Region, Forming

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 42750; Mature: 42750

Theoretical pI: Translated: 10.21; Mature: 10.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMDRKAEGEHTAGEDKASDDLPDIVDVVMEMGQAPTDPPSPPPQPAYRSQPASSSEPTLG
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
LPAHLERLADHARKYVQAASSANTRRAYAADWKHFAAWCRRQHLDPLPPDPQIVGLYITA
CHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEE
CASGKGTGDKKPNSVSTIERRLSSLTWNFSQRGQPLDRKDRHIATVLAGIRNSHASPPRQ
ECCCCCCCCCCCCHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHH
KEAILPEDLIAMLETLDRGALRGLRDRGMLLLGFAGGLRRSEIVGLDCGRDQTEDGRGWI
HHCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCEEECCCCCCCCCCCCHHH
EILDKGILVTLRGKTGWREVEIGRGSSDTTCPVVALQTWLKLARIAHGPLFRRVTGQGKA
HHHCCCEEEEEECCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHCCCCCC
IGSERLNDQEVARLVKRAALAAGVRGDLSEGERATKFSGHSLRAGLASSAEVDERYVQKQ
CCHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCHHHHCCCCCHHHHHHHHHHH
LGHTTAEMTRRYQRRRDRFRVNLTKASGL
HCCHHHHHHHHHHHHHHHEEEEEECCCCC
>Mature Secondary Structure
MMDRKAEGEHTAGEDKASDDLPDIVDVVMEMGQAPTDPPSPPPQPAYRSQPASSSEPTLG
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
LPAHLERLADHARKYVQAASSANTRRAYAADWKHFAAWCRRQHLDPLPPDPQIVGLYITA
CHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEE
CASGKGTGDKKPNSVSTIERRLSSLTWNFSQRGQPLDRKDRHIATVLAGIRNSHASPPRQ
ECCCCCCCCCCCCHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHH
KEAILPEDLIAMLETLDRGALRGLRDRGMLLLGFAGGLRRSEIVGLDCGRDQTEDGRGWI
HHCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCEEECCCCCCCCCCCCHHH
EILDKGILVTLRGKTGWREVEIGRGSSDTTCPVVALQTWLKLARIAHGPLFRRVTGQGKA
HHHCCCEEEEEECCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHCCCCCC
IGSERLNDQEVARLVKRAALAAGVRGDLSEGERATKFSGHSLRAGLASSAEVDERYVQKQ
CCHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCHHHHCCCCCHHHHHHHHHHH
LGHTTAEMTRRYQRRRDRFRVNLTKASGL
HCCHHHHHHHHHHHHHHHEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11073919 [H]