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The map label for this gene is ddpA [H]

Identifier: 13488083

GI number: 13488083

Start: 115514

End: 117079

Strand: Reverse

Name: ddpA [H]

Synonym: mll9136

Alternate gene names: 13488083

Gene position: 117079-115514 (Counterclockwise)

Preceding gene: 13488084

Following gene: 13488082

Centisome position: 33.27

GC content: 58.37

Gene sequence:

>1566_bases
ATGAACAAGCTCAGATTTTTCGCGTCCACCACGGCGTTGACGCTGATGATCGGCTCGGCCGGCGTTTCCACTGCTTTCGC
GGAAACGGTCGTTACCATGAACACGGTGCAAATCTTCAGCACAATCGACCCGGCCAAGATCTCCGATTATACCGACTACA
TGGCTGCCGTGAACCTTTATGACGGCCTGGTCACCGTCGATTCCAAGGGCAATTTGGTGCCCGAACTGGCCGAAAGCTGG
TCGATGTCGCCGGATGCCAAGGAGGCGACGTTCAAGCTGCGTGCCGACGCTAAATTCTCGGACGGCTCGCCGGTCACCGC
CGCCGATGTGGTCTACACCGTCAATCGCCTGCTGAAGATCAACCAAGGTCCGGCGACGCTGTTTGCCGGCGTGCTCAGGC
CCGGCTCGGTGACCGCCGTCGACGACAAGACCGTGAAGTTCACGCTCGAAAAGACCTTCGCGCCCTTCCTGAGCACGGTG
CCGGCGATCTTCATCGTCAATTCCAAGGTCGCCAAGGCCAATGAAGGCAGCGACGACGGCCAGACCTATTTCGCCACCCA
TGCGGCCGGTGCCGGTGCCTATCAGCTCAAGGACTGGGACCGCAGCGCGAAGATGACGATCGTGCGCGACAAGAACTACT
ATAAGGGTTTTGGCAAAGGCCCGATCGACGAGGTGCGCTTCATCATCACCAATGACGAGGCAACGGTGAAATCGCTGGCG
GCCTCCGGCGAACTGACGATGTCGAGCCAGTTCCAGTCCCCCGATACCTACAAGGCGCTTAAGGAAATGGGGCGGTTCAA
TATCGTCAGTCAGGACACGACGATCGCCTTCTACCTGAAGCTCAACACCAAGGTACCGCCGACCGACGACGTGCATATCC
GCCGGGCGATCGCGCTCGCTACCGACTACCAGACTGTCCGCAACGACATCTATCCGGGCGGGGAGATGCGCGGCCCGCTG
CCAAGCGGGTTCTCGGATTTCTATGCCTCGGACCTGCCGGAGCAGAAATACGACCTCGAAGCGGCAAAGGCGGAGATCGC
GCAATCGAAATATGCCGGCCAGGAAATCCCGATCACGCTCGGCTGGGAGGCCGGCACCAAGTACGAAGAAGAAATCGGCC
TGCTCATGCAATCCAATCTCGAGCAGATTGGCTTCAAGGTGACCCAACAATCCAATCCGTGGAACCGGGTGACCGAGCTC
GCCTCGAAGGTGGAGACGACGCCGGCGATCAACCAGATCTTCTTCGGTCCGACCTATCCTTCGCCGGACTCGATGTTTTA
TGCCCAGTACCATTCCAAATCGGCCAGCACCTGGATGTCGATGGAATGGCTGCAGGATAAGGATATCGACAAGATGATCG
ACGACGCCCGCTCGACAGTCGACGTCAAGAAGCAGGCCGAGATCTACAAGCAATTGCAGCACAAGATCGTCGAAGCGCAG
CCGGATGTGTTCCTGCTGACTCAGCGGGTGCAGCATGCCATGGACAAGTGCCTGACTGGCTTCAATGCCGTGCCGATGCA
GTCCTTCGATTATGATTTCGCCCGCTATTCCTGGATCTGCAAATAA

Upstream 100 bases:

>100_bases
ATTCGCTGCAATTCTGCCTCTAACGCGGAGGGGGCAGTCGCCCCAAACGATCGACAAGACGGCCGAAGGCCGCTGGGAAC
GAAGCTAACCGGGAGTCGCT

Downstream 100 bases:

>100_bases
CCGCGTTGCCTCCCGAGACCGGCCTCTTCCGCGAATGGAAGGGGCCGGACCTCGAGACGCTGACTGGCGATCCGCCATCG
ACGGCTGCTCCCGGCGCAAA

Product: oligopeptide ABC transporter periplasmic oligopeptide-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 521; Mature: 521

Protein sequence:

>521_residues
MNKLRFFASTTALTLMIGSAGVSTAFAETVVTMNTVQIFSTIDPAKISDYTDYMAAVNLYDGLVTVDSKGNLVPELAESW
SMSPDAKEATFKLRADAKFSDGSPVTAADVVYTVNRLLKINQGPATLFAGVLRPGSVTAVDDKTVKFTLEKTFAPFLSTV
PAIFIVNSKVAKANEGSDDGQTYFATHAAGAGAYQLKDWDRSAKMTIVRDKNYYKGFGKGPIDEVRFIITNDEATVKSLA
ASGELTMSSQFQSPDTYKALKEMGRFNIVSQDTTIAFYLKLNTKVPPTDDVHIRRAIALATDYQTVRNDIYPGGEMRGPL
PSGFSDFYASDLPEQKYDLEAAKAEIAQSKYAGQEIPITLGWEAGTKYEEEIGLLMQSNLEQIGFKVTQQSNPWNRVTEL
ASKVETTPAINQIFFGPTYPSPDSMFYAQYHSKSASTWMSMEWLQDKDIDKMIDDARSTVDVKKQAEIYKQLQHKIVEAQ
PDVFLLTQRVQHAMDKCLTGFNAVPMQSFDYDFARYSWICK

Sequences:

>Translated_521_residues
MNKLRFFASTTALTLMIGSAGVSTAFAETVVTMNTVQIFSTIDPAKISDYTDYMAAVNLYDGLVTVDSKGNLVPELAESW
SMSPDAKEATFKLRADAKFSDGSPVTAADVVYTVNRLLKINQGPATLFAGVLRPGSVTAVDDKTVKFTLEKTFAPFLSTV
PAIFIVNSKVAKANEGSDDGQTYFATHAAGAGAYQLKDWDRSAKMTIVRDKNYYKGFGKGPIDEVRFIITNDEATVKSLA
ASGELTMSSQFQSPDTYKALKEMGRFNIVSQDTTIAFYLKLNTKVPPTDDVHIRRAIALATDYQTVRNDIYPGGEMRGPL
PSGFSDFYASDLPEQKYDLEAAKAEIAQSKYAGQEIPITLGWEAGTKYEEEIGLLMQSNLEQIGFKVTQQSNPWNRVTEL
ASKVETTPAINQIFFGPTYPSPDSMFYAQYHSKSASTWMSMEWLQDKDIDKMIDDARSTVDVKKQAEIYKQLQHKIVEAQ
PDVFLLTQRVQHAMDKCLTGFNAVPMQSFDYDFARYSWICK
>Mature_521_residues
MNKLRFFASTTALTLMIGSAGVSTAFAETVVTMNTVQIFSTIDPAKISDYTDYMAAVNLYDGLVTVDSKGNLVPELAESW
SMSPDAKEATFKLRADAKFSDGSPVTAADVVYTVNRLLKINQGPATLFAGVLRPGSVTAVDDKTVKFTLEKTFAPFLSTV
PAIFIVNSKVAKANEGSDDGQTYFATHAAGAGAYQLKDWDRSAKMTIVRDKNYYKGFGKGPIDEVRFIITNDEATVKSLA
ASGELTMSSQFQSPDTYKALKEMGRFNIVSQDTTIAFYLKLNTKVPPTDDVHIRRAIALATDYQTVRNDIYPGGEMRGPL
PSGFSDFYASDLPEQKYDLEAAKAEIAQSKYAGQEIPITLGWEAGTKYEEEIGLLMQSNLEQIGFKVTQQSNPWNRVTEL
ASKVETTPAINQIFFGPTYPSPDSMFYAQYHSKSASTWMSMEWLQDKDIDKMIDDARSTVDVKKQAEIYKQLQHKIVEAQ
PDVFLLTQRVQHAMDKCLTGFNAVPMQSFDYDFARYSWICK

Specific function: Part of the ABC transporter complex ddpABCDF, which is probably involved in D,D-dipeptide transport [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI1787762, Length=513, Percent_Identity=28.6549707602339, Blast_Score=191, Evalue=7e-50,
Organism=Escherichia coli, GI1787495, Length=394, Percent_Identity=27.9187817258883, Blast_Score=117, Evalue=2e-27,
Organism=Escherichia coli, GI1789966, Length=543, Percent_Identity=25.2302025782689, Blast_Score=103, Evalue=3e-23,
Organism=Escherichia coli, GI1787052, Length=521, Percent_Identity=23.0326295585413, Blast_Score=101, Evalue=1e-22,
Organism=Escherichia coli, GI87081878, Length=432, Percent_Identity=26.6203703703704, Blast_Score=100, Evalue=4e-22,
Organism=Escherichia coli, GI1789397, Length=531, Percent_Identity=24.2937853107345, Blast_Score=99, Evalue=8e-22,
Organism=Escherichia coli, GI1789887, Length=448, Percent_Identity=22.7678571428571, Blast_Score=79, Evalue=8e-16,
Organism=Escherichia coli, GI1787551, Length=306, Percent_Identity=26.1437908496732, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI87082063, Length=270, Percent_Identity=24.8148148148148, Blast_Score=63, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 57814; Mature: 57814

Theoretical pI: Translated: 5.04; Mature: 5.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKLRFFASTTALTLMIGSAGVSTAFAETVVTMNTVQIFSTIDPAKISDYTDYMAAVNLY
CCCEEEEEHHEEEEEEECCCCCHHHHHHHHHHHHHEEEEECCCCHHHCHHHHHHHHHHHH
DGLVTVDSKGNLVPELAESWSMSPDAKEATFKLRADAKFSDGSPVTAADVVYTVNRLLKI
CCEEEECCCCCCCHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHEE
NQGPATLFAGVLRPGSVTAVDDKTVKFTLEKTFAPFLSTVPAIFIVNSKVAKANEGSDDG
CCCHHHHHHHHCCCCCEEEECCCEEEEEEHHHHHHHHHHCCEEEEECCCCCCCCCCCCCC
QTYFATHAAGAGAYQLKDWDRSAKMTIVRDKNYYKGFGKGPIDEVRFIITNDEATVKSLA
CEEEEEECCCCCCEEECCCCCCCCEEEEECCCCCCCCCCCCHHHEEEEEECCCHHHHHHH
ASGELTMSSQFQSPDTYKALKEMGRFNIVSQDTTIAFYLKLNTKVPPTDDVHIRRAIALA
CCCCEEECCCCCCCHHHHHHHHCCCEEEEECCCEEEEEEEECCCCCCCCCHHHHHHHHHH
TDYQTVRNDIYPGGEMRGPLPSGFSDFYASDLPEQKYDLEAAKAEIAQSKYAGQEIPITL
HHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEE
GWEAGTKYEEEIGLLMQSNLEQIGFKVTQQSNPWNRVTELASKVETTPAINQIFFGPTYP
ECCCCCCHHHHHHHHHHCCHHHHCEEEECCCCCHHHHHHHHHHHCCCCCHHHEEECCCCC
SPDSMFYAQYHSKSASTWMSMEWLQDKDIDKMIDDARSTVDVKKQAEIYKQLQHKIVEAQ
CCCCEEEEECCCCCCCHHEEHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDVFLLTQRVQHAMDKCLTGFNAVPMQSFDYDFARYSWICK
CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHEEECC
>Mature Secondary Structure
MNKLRFFASTTALTLMIGSAGVSTAFAETVVTMNTVQIFSTIDPAKISDYTDYMAAVNLY
CCCEEEEEHHEEEEEEECCCCCHHHHHHHHHHHHHEEEEECCCCHHHCHHHHHHHHHHHH
DGLVTVDSKGNLVPELAESWSMSPDAKEATFKLRADAKFSDGSPVTAADVVYTVNRLLKI
CCEEEECCCCCCCHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHEE
NQGPATLFAGVLRPGSVTAVDDKTVKFTLEKTFAPFLSTVPAIFIVNSKVAKANEGSDDG
CCCHHHHHHHHCCCCCEEEECCCEEEEEEHHHHHHHHHHCCEEEEECCCCCCCCCCCCCC
QTYFATHAAGAGAYQLKDWDRSAKMTIVRDKNYYKGFGKGPIDEVRFIITNDEATVKSLA
CEEEEEECCCCCCEEECCCCCCCCEEEEECCCCCCCCCCCCHHHEEEEEECCCHHHHHHH
ASGELTMSSQFQSPDTYKALKEMGRFNIVSQDTTIAFYLKLNTKVPPTDDVHIRRAIALA
CCCCEEECCCCCCCHHHHHHHHCCCEEEEECCCEEEEEEEECCCCCCCCCHHHHHHHHHH
TDYQTVRNDIYPGGEMRGPLPSGFSDFYASDLPEQKYDLEAAKAEIAQSKYAGQEIPITL
HHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEE
GWEAGTKYEEEIGLLMQSNLEQIGFKVTQQSNPWNRVTELASKVETTPAINQIFFGPTYP
ECCCCCCHHHHHHHHHHCCHHHHCEEEECCCCCHHHHHHHHHHHCCCCCHHHEEECCCCC
SPDSMFYAQYHSKSASTWMSMEWLQDKDIDKMIDDARSTVDVKKQAEIYKQLQHKIVEAQ
CCCCEEEEECCCCCCCHHEEHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDVFLLTQRVQHAMDKCLTGFNAVPMQSFDYDFARYSWICK
CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9751644 [H]