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The map label for this gene is chrR [H]

Identifier: 13476698

GI number: 13476698

Start: 6660122

End: 6660775

Strand: Direct

Name: chrR [H]

Synonym: mlr8089

Alternate gene names: 13476698

Gene position: 6660122-6660775 (Clockwise)

Preceding gene: 13476697

Following gene: 13476699

Centisome position: 94.66

GC content: 64.07

Gene sequence:

>654_bases
ATGATCAAGCATCATCCGAGTGATGAGACGCTCTTCCGTTATGCCAACGGCTCTCTCGAATCTGGGCCGCGCATCGTCGT
GGCCGTCCATGTCGGCGCCTGCACGGCTTGCGCCGAGCGCATTGCCGGATTCGAAGCGCTTGGTGGCTCCCTTCTGCACG
ATATCGAGCCGGAGGACATGGAACCTGGAGCCCTCGATCATGTGATGGCGATGATCGACACCGGTGAGGCCAGTCGCGCC
AAGGCCGCGCCCGCCAACAGGCTTCCCCGCGCCGATGTGGGCATCCGCTTGCCTGAGGTGCTTGACGACTGTGGCATCGG
GCCATGGCGCTGGATCGGGCCGGGCGTGCGCTGGAGCCGCGTGACGCTGCCTGATGACGACAGCGCCAACGTCATGCTGC
TGAAGGTCGTGGCCGGCCGCAAGCTGCCGGAGCACACGCATGCGGGCTATGAATACACCCATATACTGAAAGGGGCCTTC
TCGGACGCGCGCGGCCGCTATGGCCCGGGGGATCTCGACGAGGCCGATGACGACGTTCAGCATCAGCCGATCGTGGACAA
GGAAGGCGAATGTATCTGCATTGCCGCGCTCGAAGGGCAGATGAAGCTGAGCGGCTTCTTCGGCAGGCTGATCCAGCCTC
TGTTCGGCGGCTGA

Upstream 100 bases:

>100_bases
AATCCGAGATCGCCAACGCGGTCGGCATCCCGCTCGGCACCGTTAAATCACGCGTGCGGCTGGCCCTTGGCCGGCTGCGC
CAAATCCTGGACGACCTCAA

Downstream 100 bases:

>100_bases
GCTCCGGTAATGAGCGTCGTCTCGGCTATCGTTCTAGCGGCGGCCGCTCTTTGTGCCACCATGGCGGTGGCGTGGCTGGT
CGCGATACGGACTGGCAGCT

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 217; Mature: 217

Protein sequence:

>217_residues
MIKHHPSDETLFRYANGSLESGPRIVVAVHVGACTACAERIAGFEALGGSLLHDIEPEDMEPGALDHVMAMIDTGEASRA
KAAPANRLPRADVGIRLPEVLDDCGIGPWRWIGPGVRWSRVTLPDDDSANVMLLKVVAGRKLPEHTHAGYEYTHILKGAF
SDARGRYGPGDLDEADDDVQHQPIVDKEGECICIAALEGQMKLSGFFGRLIQPLFGG

Sequences:

>Translated_217_residues
MIKHHPSDETLFRYANGSLESGPRIVVAVHVGACTACAERIAGFEALGGSLLHDIEPEDMEPGALDHVMAMIDTGEASRA
KAAPANRLPRADVGIRLPEVLDDCGIGPWRWIGPGVRWSRVTLPDDDSANVMLLKVVAGRKLPEHTHAGYEYTHILKGAF
SDARGRYGPGDLDEADDDVQHQPIVDKEGECICIAALEGQMKLSGFFGRLIQPLFGG
>Mature_217_residues
MIKHHPSDETLFRYANGSLESGPRIVVAVHVGACTACAERIAGFEALGGSLLHDIEPEDMEPGALDHVMAMIDTGEASRA
KAAPANRLPRADVGIRLPEVLDDCGIGPWRWIGPGVRWSRVTLPDDDSANVMLLKVVAGRKLPEHTHAGYEYTHILKGAF
SDARGRYGPGDLDEADDDVQHQPIVDKEGECICIAALEGQMKLSGFFGRLIQPLFGG

Specific function: Anti-sigma factor that inhibits the activity of the extracytoplasmic function (ECF) sigma (E) factor, thereby indirectly regulating the transcription of the cycA and rpoE genes [H]

COG id: COG3806

COG function: function code T; Anti-sigma factor

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012807
- InterPro:   IPR011051
- InterPro:   IPR014710 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23417; Mature: 23417

Theoretical pI: Translated: 4.97; Mature: 4.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKHHPSDETLFRYANGSLESGPRIVVAVHVGACTACAERIAGFEALGGSLLHDIEPEDM
CCCCCCCCCCEEEECCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHCCHHHHCCCCCCC
EPGALDHVMAMIDTGEASRAKAAPANRLPRADVGIRLPEVLDDCGIGPWRWIGPGVRWSR
CCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCEEEE
VTLPDDDSANVMLLKVVAGRKLPEHTHAGYEYTHILKGAFSDARGRYGPGDLDEADDDVQ
EECCCCCCCCEEEEEEECCCCCCCHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
HQPIVDKEGECICIAALEGQMKLSGFFGRLIQPLFGG
CCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MIKHHPSDETLFRYANGSLESGPRIVVAVHVGACTACAERIAGFEALGGSLLHDIEPEDM
CCCCCCCCCCEEEECCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHCCHHHHCCCCCCC
EPGALDHVMAMIDTGEASRAKAAPANRLPRADVGIRLPEVLDDCGIGPWRWIGPGVRWSR
CCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCEEEE
VTLPDDDSANVMLLKVVAGRKLPEHTHAGYEYTHILKGAFSDARGRYGPGDLDEADDDVQ
EECCCCCCCCEEEEEEECCCCCCCHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
HQPIVDKEGECICIAALEGQMKLSGFFGRLIQPLFGG
CCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7721683 [H]