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The map label for this gene is radA [C]

Identifier: 13476691

GI number: 13476691

Start: 6652864

End: 6654351

Strand: Direct

Name: radA [C]

Synonym: mlr8082

Alternate gene names: 13476691

Gene position: 6652864-6654351 (Clockwise)

Preceding gene: 13476687

Following gene: 13476692

Centisome position: 94.55

GC content: 57.12

Gene sequence:

>1488_bases
GTGGATCAAGACGACGCTTCACCAATATCATCTGGAGTGGAAGGCCTCGACTATGTCCTGCGAGGCGGATACGCAAAATA
CCGTTCACATCTTGTAGAGGGCAGGCCAGGTTCAGGTAAGACCACACTTGGTCTGCAGTTTCTGATCAAGGGCGCGGCGG
CTGGCGAGAAATGCCTTTATATAACGCTGTCCGAAAGCAGGCGTGAGCTGCAATCGGTCGCGGTACGGCATGGATTTTCT
CTTGACGGTATCGAAATCCTCGAGCTCGTCCCGCCGGAGCTAAGCCTCGATCCGTCGCAGTTACAAACTCTGGTTCATTC
ATCCGATCTCGAGCTTGGTGAAACCGTCCAGGCCGCGCTCGCCGAAATCGAGCGCATGAAGCCAGATCGCGTGGTCTTCG
ATTCCCTGTCGGAAATTCGCCTCTTGTCGCAGGGCTCGTTACGCTATCGGCGGCAGGTTCTGGCTTTGAAAAGCTTTTTC
CTGCTCAACAATGCGACGGTGCTTCTGCTTGACGATCTCACCGCTGAACATGACGATCTAAACCTGCATTCCATCAGTCA
TGGCGTCATCCGGATGGAACAGCTTTCGCCGATCTATGGCGGAGAGCGGAGGCGGCTGCGCATCATCAAAATGCGCGGCG
TTCAAATTCGGGGCGGCTTCCACGACTTCGTCATTCGACCGGGCGGCGTGATGGTGTTTCCGCGCTTGGTTGCCTCCGAA
CACGAGATGGCCGAGCATGGAACGCCGGCAACCGGTAATGGATCTGTCGACACGCTCGTGGGTGGCGGGCTGGACCGCGG
CACCAGCACTCTCCTGATGGGACCTTCTGGTGTCGGTAAATCGACCATCGCGTGCAGCTATTGCCATTCGGCTCTCAAGC
GCGGCGAACATGTGCTGGTGCTTTTGTTCGATGAAACCAAGCGGATTTTCCTGGCGCGCGCGTCAGGCCTCGGCATGGAC
CTGGGGCCATTCGCCGACAACGGCAATTTGCTGCTGGAACAGATCGACCCGGCGGAATTGTCGCCTGGTGAATTGTCGTC
GCGCATCCAGTCGGCTGTGGAGCGCTCAAGTGCAAGGATCGTCGTCATCGACAGCCTGACCGGGTATCTCAATGCCATGT
CGGAGGAGCAGCATCTTGTGCTGCAGATGCACGAGATCCTGACATACCTTAATCAAAAGGGCGTTGTGACGATCCTGCTG
TTGGCCAATCATGGGCTGATCGGGCAAATGTCAGCCCCCGTCGACATGACCTATCTCTGCGATTCCGTAATGCTACTGCG
TTTCTTCGAAAGCGGCGGCCGTCTGAGACGAGCTATTTCCGTGGTCAAAAAACGCGTCGGGCCGCATGAGGACACCATTC
GCGAATTCAAGATAAGCGCGACCGGCCTGGCCGTCGGCGAACCACTAGAGGAGTTCCGAGGGATACTGACTGGCGTGCCC
ACCTACGAGGGTAAGCAAGGCAACCTGCTGCAAGACAAGGCATCGTGA

Upstream 100 bases:

>100_bases
ACTCCCTCTCTTCCGAATGGCCCTCATTGCCTCTCTTGCTGAAGAGGGAACCATTGAAAATGCTAGCCGTTAACGTGGTC
ACGAAAAGCGAGCGGGCAAC

Downstream 100 bases:

>100_bases
TGCCTTCAGACCGCAGTGTGCTCGTGCTGGCGCCGGTCGGGCGCGACGCGAAGGTCGCGTCTGCAATCCTCGCGGAGAAC
GACATCAAGTCCCACATCTG

Product: circadian clock gene kaiC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 495; Mature: 495

Protein sequence:

>495_residues
MDQDDASPISSGVEGLDYVLRGGYAKYRSHLVEGRPGSGKTTLGLQFLIKGAAAGEKCLYITLSESRRELQSVAVRHGFS
LDGIEILELVPPELSLDPSQLQTLVHSSDLELGETVQAALAEIERMKPDRVVFDSLSEIRLLSQGSLRYRRQVLALKSFF
LLNNATVLLLDDLTAEHDDLNLHSISHGVIRMEQLSPIYGGERRRLRIIKMRGVQIRGGFHDFVIRPGGVMVFPRLVASE
HEMAEHGTPATGNGSVDTLVGGGLDRGTSTLLMGPSGVGKSTIACSYCHSALKRGEHVLVLLFDETKRIFLARASGLGMD
LGPFADNGNLLLEQIDPAELSPGELSSRIQSAVERSSARIVVIDSLTGYLNAMSEEQHLVLQMHEILTYLNQKGVVTILL
LANHGLIGQMSAPVDMTYLCDSVMLLRFFESGGRLRRAISVVKKRVGPHEDTIREFKISATGLAVGEPLEEFRGILTGVP
TYEGKQGNLLQDKAS

Sequences:

>Translated_495_residues
MDQDDASPISSGVEGLDYVLRGGYAKYRSHLVEGRPGSGKTTLGLQFLIKGAAAGEKCLYITLSESRRELQSVAVRHGFS
LDGIEILELVPPELSLDPSQLQTLVHSSDLELGETVQAALAEIERMKPDRVVFDSLSEIRLLSQGSLRYRRQVLALKSFF
LLNNATVLLLDDLTAEHDDLNLHSISHGVIRMEQLSPIYGGERRRLRIIKMRGVQIRGGFHDFVIRPGGVMVFPRLVASE
HEMAEHGTPATGNGSVDTLVGGGLDRGTSTLLMGPSGVGKSTIACSYCHSALKRGEHVLVLLFDETKRIFLARASGLGMD
LGPFADNGNLLLEQIDPAELSPGELSSRIQSAVERSSARIVVIDSLTGYLNAMSEEQHLVLQMHEILTYLNQKGVVTILL
LANHGLIGQMSAPVDMTYLCDSVMLLRFFESGGRLRRAISVVKKRVGPHEDTIREFKISATGLAVGEPLEEFRGILTGVP
TYEGKQGNLLQDKAS
>Mature_495_residues
MDQDDASPISSGVEGLDYVLRGGYAKYRSHLVEGRPGSGKTTLGLQFLIKGAAAGEKCLYITLSESRRELQSVAVRHGFS
LDGIEILELVPPELSLDPSQLQTLVHSSDLELGETVQAALAEIERMKPDRVVFDSLSEIRLLSQGSLRYRRQVLALKSFF
LLNNATVLLLDDLTAEHDDLNLHSISHGVIRMEQLSPIYGGERRRLRIIKMRGVQIRGGFHDFVIRPGGVMVFPRLVASE
HEMAEHGTPATGNGSVDTLVGGGLDRGTSTLLMGPSGVGKSTIACSYCHSALKRGEHVLVLLFDETKRIFLARASGLGMD
LGPFADNGNLLLEQIDPAELSPGELSSRIQSAVERSSARIVVIDSLTGYLNAMSEEQHLVLQMHEILTYLNQKGVVTILL
LANHGLIGQMSAPVDMTYLCDSVMLLRFFESGGRLRRAISVVKKRVGPHEDTIREFKISATGLAVGEPLEEFRGILTGVP
TYEGKQGNLLQDKAS

Specific function: May Play A Role In The Repair Of Endogenous Alkylation Damage. [C]

COG id: COG0467

COG function: function code T; RecA-superfamily ATPases implicated in signal transduction

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 kaiC domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014774
- InterPro:   IPR013503
- InterPro:   IPR010624 [H]

Pfam domain/function: PF06745 KaiC [H]

EC number: NA

Molecular weight: Translated: 53975; Mature: 53975

Theoretical pI: Translated: 6.35; Mature: 6.35

Prosite motif: PS51146 KAIC ; PS50162 RECA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDQDDASPISSGVEGLDYVLRGGYAKYRSHLVEGRPGSGKTTLGLQFLIKGAAAGEKCLY
CCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCEEEE
ITLSESRRELQSVAVRHGFSLDGIEILELVPPELSLDPSQLQTLVHSSDLELGETVQAAL
EEECHHHHHHHHHHHHCCCCCCCCHHEECCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHH
AEIERMKPDRVVFDSLSEIRLLSQGSLRYRRQVLALKSFFLLNNATVLLLDDLTAEHDDL
HHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCC
NLHSISHGVIRMEQLSPIYGGERRRLRIIKMRGVQIRGGFHDFVIRPGGVMVFPRLVASE
CCEECCCCEEEHHHCCCCCCCCCCEEEEEEEECEEEECCCEEEEECCCCEEEEHHHHHCH
HEMAEHGTPATGNGSVDTLVGGGLDRGTSTLLMGPSGVGKSTIACSYCHSALKRGEHVLV
HHHHHCCCCCCCCCCCHHEECCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCEEEE
LLFDETKRIFLARASGLGMDLGPFADNGNLLLEQIDPAELSPGELSSRIQSAVERSSARI
EEECCCCEEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCEE
VVIDSLTGYLNAMSEEQHLVLQMHEILTYLNQKGVVTILLLANHGLIGQMSAPVDMTYLC
EEEECCHHHHHHCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCEECCCCCCHHHHHH
DSVMLLRFFESGGRLRRAISVVKKRVGPHEDTIREFKISATGLAVGEPLEEFRGILTGVP
HHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHEEEEECCCCCCCCHHHHHHHHCCCC
TYEGKQGNLLQDKAS
CCCCCCCCCCCCCCC
>Mature Secondary Structure
MDQDDASPISSGVEGLDYVLRGGYAKYRSHLVEGRPGSGKTTLGLQFLIKGAAAGEKCLY
CCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCEEEE
ITLSESRRELQSVAVRHGFSLDGIEILELVPPELSLDPSQLQTLVHSSDLELGETVQAAL
EEECHHHHHHHHHHHHCCCCCCCCHHEECCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHH
AEIERMKPDRVVFDSLSEIRLLSQGSLRYRRQVLALKSFFLLNNATVLLLDDLTAEHDDL
HHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCC
NLHSISHGVIRMEQLSPIYGGERRRLRIIKMRGVQIRGGFHDFVIRPGGVMVFPRLVASE
CCEECCCCEEEHHHCCCCCCCCCCEEEEEEEECEEEECCCEEEEECCCCEEEEHHHHHCH
HEMAEHGTPATGNGSVDTLVGGGLDRGTSTLLMGPSGVGKSTIACSYCHSALKRGEHVLV
HHHHHCCCCCCCCCCCHHEECCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCEEEE
LLFDETKRIFLARASGLGMDLGPFADNGNLLLEQIDPAELSPGELSSRIQSAVERSSARI
EEECCCCEEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCEE
VVIDSLTGYLNAMSEEQHLVLQMHEILTYLNQKGVVTILLLANHGLIGQMSAPVDMTYLC
EEEECCHHHHHHCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCEECCCCCCHHHHHH
DSVMLLRFFESGGRLRRAISVVKKRVGPHEDTIREFKISATGLAVGEPLEEFRGILTGVP
HHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHEEEEECCCCCCCCHHHHHHHHCCCC
TYEGKQGNLLQDKAS
CCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]