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The map label for this gene is ymdC [H]

Identifier: 13476687

GI number: 13476687

Start: 6648690

End: 6650090

Strand: Direct

Name: ymdC [H]

Synonym: mlr8077

Alternate gene names: 13476687

Gene position: 6648690-6650090 (Clockwise)

Preceding gene: 13476686

Following gene: 13476691

Centisome position: 94.49

GC content: 57.82

Gene sequence:

>1401_bases
ATGGACGTCTCGATTACGCAAACATCGGCCGATAAAATCAAAGCAGGTAAGAGCGGCCTGCTGCTGATTTCTGACAATTA
CGATGCGTTCGCCGCGCGTGTTTTAGCGGCAAGGGGCGCGGCTCGCACTCTCGATCTCATGTACTATCTCTGGCATGACG
ACCACACGGGGCGCTTGCTTTTGCAGGAAGTTGTCCGGGCGGCCCAGCGAGGCGTACGGGTCAGAATGCTGCTCGACGAC
GTCAATCCGCGCAAGAGCGATGCCGCCTATTTGGCGCTGAGCAACCATCCAAACATCGAACTCAAATTGTTCAACCCGAG
CGGCATCAGAGCGCGCGGCCTCATGCGCGGCGCGGAAGTCCTCTTGCGGCTTTTTGCATTGACAAGGCGGATGCACAACA
AGGCGTGGATTGCCGACGACAACATCGCAATTGTCGGTGGGCGCAATGTCGGCGATGCATATTTTGACGCGGCGGAGACG
AATTTCCGTGACCTCGACATGCTGCTTCTCGGTCCCGCCGTCCAGCAAACCGCACAGATCTTCCAAACTTTCTGGGTATG
CCAGGACGCGAAGCCAATAGCCGAACTCGGTGCAGCCGCTCCAGGCTCGCATGCCCCTTATTTCGAGGGAAGAGAGGAGA
AAACCGAGTCGACGCTTCTGAGCGGGATCAGGGACAAGGGCTCCATCGCCGAGTTCATATCGGCGAGCAGCAACGTACAT
TGGGTCGAGCGCGTGCGCGTGATCTCCGACCCTCCGGAAAAGGTCCGAGGCTGGAGACCGCGCAGTTGGCTGATGAAGGA
GTTGCTCCCAATCATTCAATCGGCGCGCAAGCGTGTTGAAATCGTGTCCCCGTATTTTATCCCCGGCAAGAAGGGATCAA
AAATCCTCGGCGACCTCGTCGACGACGGGGTGCAGGTCGCTGTGTTGACCAACTCCTTGGCCGCGACCGATGTCGCCGCG
GTCCACGGGGCATACGCCAACTATCGCAAGCGCTTGCTGAGAATGGGCGTGCAGCTTTTCGAGCTCCAACCCTTTAGCCG
GCAGCCCAAGATTTCCGTATTTGGATCCAAGGGTGCCAGCCTGCACACCAAAGCGTTCAGCGTCGACAACAGGATCGGTT
TCGTCGGATCTTTTAACTTCGATCCGCGGTCCGTATCCCTGAATTCGGAAATGGGAGTGCTTTTTGAAGACGAGAATCTG
GTCGCGGAACTGCGGCATAGGTTCAAATCGGAGATAGCGCCGGAAGCGAGCTACCGGCTCGAATTGAAGAACGAGGTTCT
TCGCTGGCATGGCAGCGATGAAGGCAGGCTGCAAACCTATACTCGCGAACCCGAGGCAGCATGGTTCCGCCGCATCCTGG
CCGCCCTGGTCAGGCACCTCCCCATCGAATCTCAGCTTTAG

Upstream 100 bases:

>100_bases
ACTATCAGCAGGCTCAAGGCCCTCGTGCAACCAGATCGGCGCTCGCGGGTTCTTGACCTAATGAAACGGCGCCTCGATCT
CCTCCGAAACCGGTCAATTC

Downstream 100 bases:

>100_bases
CCGTACGTCGGCAGATTCTGGAAATGTAGACGCTCTCTCCCAACGCAATTCAAGCGGGTTCCCATCCGCCTGAACCTTGC
CGAAAGGAATAACTGGCTGA

Product: cardiolipin synthetase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 466; Mature: 466

Protein sequence:

>466_residues
MDVSITQTSADKIKAGKSGLLLISDNYDAFAARVLAARGAARTLDLMYYLWHDDHTGRLLLQEVVRAAQRGVRVRMLLDD
VNPRKSDAAYLALSNHPNIELKLFNPSGIRARGLMRGAEVLLRLFALTRRMHNKAWIADDNIAIVGGRNVGDAYFDAAET
NFRDLDMLLLGPAVQQTAQIFQTFWVCQDAKPIAELGAAAPGSHAPYFEGREEKTESTLLSGIRDKGSIAEFISASSNVH
WVERVRVISDPPEKVRGWRPRSWLMKELLPIIQSARKRVEIVSPYFIPGKKGSKILGDLVDDGVQVAVLTNSLAATDVAA
VHGAYANYRKRLLRMGVQLFELQPFSRQPKISVFGSKGASLHTKAFSVDNRIGFVGSFNFDPRSVSLNSEMGVLFEDENL
VAELRHRFKSEIAPEASYRLELKNEVLRWHGSDEGRLQTYTREPEAAWFRRILAALVRHLPIESQL

Sequences:

>Translated_466_residues
MDVSITQTSADKIKAGKSGLLLISDNYDAFAARVLAARGAARTLDLMYYLWHDDHTGRLLLQEVVRAAQRGVRVRMLLDD
VNPRKSDAAYLALSNHPNIELKLFNPSGIRARGLMRGAEVLLRLFALTRRMHNKAWIADDNIAIVGGRNVGDAYFDAAET
NFRDLDMLLLGPAVQQTAQIFQTFWVCQDAKPIAELGAAAPGSHAPYFEGREEKTESTLLSGIRDKGSIAEFISASSNVH
WVERVRVISDPPEKVRGWRPRSWLMKELLPIIQSARKRVEIVSPYFIPGKKGSKILGDLVDDGVQVAVLTNSLAATDVAA
VHGAYANYRKRLLRMGVQLFELQPFSRQPKISVFGSKGASLHTKAFSVDNRIGFVGSFNFDPRSVSLNSEMGVLFEDENL
VAELRHRFKSEIAPEASYRLELKNEVLRWHGSDEGRLQTYTREPEAAWFRRILAALVRHLPIESQL
>Mature_466_residues
MDVSITQTSADKIKAGKSGLLLISDNYDAFAARVLAARGAARTLDLMYYLWHDDHTGRLLLQEVVRAAQRGVRVRMLLDD
VNPRKSDAAYLALSNHPNIELKLFNPSGIRARGLMRGAEVLLRLFALTRRMHNKAWIADDNIAIVGGRNVGDAYFDAAET
NFRDLDMLLLGPAVQQTAQIFQTFWVCQDAKPIAELGAAAPGSHAPYFEGREEKTESTLLSGIRDKGSIAEFISASSNVH
WVERVRVISDPPEKVRGWRPRSWLMKELLPIIQSARKRVEIVSPYFIPGKKGSKILGDLVDDGVQVAVLTNSLAATDVAA
VHGAYANYRKRLLRMGVQLFELQPFSRQPKISVFGSKGASLHTKAFSVDNRIGFVGSFNFDPRSVSLNSEMGVLFEDENL
VAELRHRFKSEIAPEASYRLELKNEVLRWHGSDEGRLQTYTREPEAAWFRRILAALVRHLPIESQL

Specific function: Unknown

COG id: COG1502

COG function: function code I; Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PLD phosphodiesterase domains [H]

Homologues:

Organism=Escherichia coli, GI87081826, Length=459, Percent_Identity=38.7799564270153, Blast_Score=297, Evalue=9e-82,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001736 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 52118; Mature: 52118

Theoretical pI: Translated: 9.84; Mature: 9.84

Prosite motif: PS50035 PLD

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDVSITQTSADKIKAGKSGLLLISDNYDAFAARVLAARGAARTLDLMYYLWHDDHTGRLL
CCCEEECCCHHHHHCCCCCEEEEECCCHHHHHHHHHHCCCHHHEEEEEEEEECCCCCHHH
LQEVVRAAQRGVRVRMLLDDVNPRKSDAAYLALSNHPNIELKLFNPSGIRARGLMRGAEV
HHHHHHHHHCCCEEEEEEECCCCCCCCCEEEEECCCCCEEEEEECCCCCCHHHHHHHHHH
LLRLFALTRRMHNKAWIADDNIAIVGGRNVGDAYFDAAETNFRDLDMLLLGPAVQQTAQI
HHHHHHHHHHHCCCCEEECCCEEEEECCCCCCHHHHHCCCCCCCCHHHEECHHHHHHHHH
FQTFWVCQDAKPIAELGAAAPGSHAPYFEGREEKTESTLLSGIRDKGSIAEFISASSNVH
HHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHCCCCCC
WVERVRVISDPPEKVRGWRPRSWLMKELLPIIQSARKRVEIVSPYFIPGKKGSKILGDLV
HHHHHHHCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHEEEECCEECCCCCCCHHHHHHH
DDGVQVAVLTNSLAATDVAAVHGAYANYRKRLLRMGVQLFELQPFSRQPKISVFGSKGAS
CCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCEEEECCCCCE
LHTKAFSVDNRIGFVGSFNFDPRSVSLNSEMGVLFEDENLVAELRHRFKSEIAPEASYRL
EEEEEEECCCCEEEEEECCCCCCEEEECCCCCEEECCCHHHHHHHHHHHHHCCCCCCEEE
ELKNEVLRWHGSDEGRLQTYTREPEAAWFRRILAALVRHLPIESQL
EEHHHHHEECCCCCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MDVSITQTSADKIKAGKSGLLLISDNYDAFAARVLAARGAARTLDLMYYLWHDDHTGRLL
CCCEEECCCHHHHHCCCCCEEEEECCCHHHHHHHHHHCCCHHHEEEEEEEEECCCCCHHH
LQEVVRAAQRGVRVRMLLDDVNPRKSDAAYLALSNHPNIELKLFNPSGIRARGLMRGAEV
HHHHHHHHHCCCEEEEEEECCCCCCCCCEEEEECCCCCEEEEEECCCCCCHHHHHHHHHH
LLRLFALTRRMHNKAWIADDNIAIVGGRNVGDAYFDAAETNFRDLDMLLLGPAVQQTAQI
HHHHHHHHHHHCCCCEEECCCEEEEECCCCCCHHHHHCCCCCCCCHHHEECHHHHHHHHH
FQTFWVCQDAKPIAELGAAAPGSHAPYFEGREEKTESTLLSGIRDKGSIAEFISASSNVH
HHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHCCCCCC
WVERVRVISDPPEKVRGWRPRSWLMKELLPIIQSARKRVEIVSPYFIPGKKGSKILGDLV
HHHHHHHCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHEEEECCEECCCCCCCHHHHHHH
DDGVQVAVLTNSLAATDVAAVHGAYANYRKRLLRMGVQLFELQPFSRQPKISVFGSKGAS
CCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCEEEECCCCCE
LHTKAFSVDNRIGFVGSFNFDPRSVSLNSEMGVLFEDENLVAELRHRFKSEIAPEASYRL
EEEEEEECCCCEEEEEECCCCCCEEEECCCCCEEECCCHHHHHHHHHHHHHCCCCCCEEE
ELKNEVLRWHGSDEGRLQTYTREPEAAWFRRILAALVRHLPIESQL
EEHHHHHEECCCCCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]