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The map label for this gene is yjdC [C]

Identifier: 13476546

GI number: 13476546

Start: 6528073

End: 6528654

Strand: Direct

Name: yjdC [C]

Synonym: mlr7895

Alternate gene names: 13476546

Gene position: 6528073-6528654 (Clockwise)

Preceding gene: 13476545

Following gene: 13476547

Centisome position: 92.78

GC content: 63.57

Gene sequence:

>582_bases
ATGACGCCGTCACCTGTCTCCGACAAACGCCAGCATGTCGTCGAAACCGCCTATGCGCTATTCAAGCGCGCCGGCTTCCA
TGCCACCGGCGTCGATCGGATCATCGCCGAGGCCGACGTGGCCAAGATGACGATGTACCGGCATTTCCCCAGCAAGGACG
AGTTGATCGTCGCGGTGCTCGACTACCGCGCCAGGCGTTTTGACGATCAACTCGACAAGCTTGCCCAAAAGAGCATCACG
CCGGAGCAGAAGATCGCAGAGATTTTCGACTGGCATGGGCGCTGGTTCCGCAGTCCGGATTTCCACGGCTGTCTGTTCGC
GCATGCGCTGGCCGAATTCGGCGATCCCGGGCATCCGGTGTTCCAGGCTGTCGCCAGGCAGAAGAATGGCTTGAGGCAGC
GCATGCGGTCGATCCTGTCGGAGGTGATGCCGCGCGGGCGGGCCGAGAACGTGGCGGCGACGCTGCTGATGCTGATCGAA
GGCGCCACCCTGATGGCGCAGATGGGGCAGGCTGACACCGCCCTTCGTGAAGCCCGCAAGACCGCCCTCGACATCATCGC
CGCCTCGCGCAGGCCGCAATGA

Upstream 100 bases:

>100_bases
CGGCTGGATCAGCCGCAGGCGTTTTCTGTGCCGTGTTGACAGAAGGTGAGATTGGTCACATGAATATGGGACAGACCTGT
CTCATCACATGGTGCGCATC

Downstream 100 bases:

>100_bases
GCCCGCTGGTCATCGGGCTCGCGCTTTTCGCGGCGATCCTGCACGCAAGCTGGAACGCTTTTCTGCGAACCGGCGCCGAC
AGGTTGTGGACAGTCACCGT

Product: transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator; Transcriptional Regulator TetR Family Protein; Regulatory Protein TetR; TetR Family Regulatory Protein; Regulatory Protein; Transcriptional Regulator Protein; Transcriptional Regulator Tetr Family; Transcriptional Regulator Protein TetR Family; Transcriptional Regulatory Protein; Regulatory Protein Tetr; TetR-Family Transcriptional Regulator; Transcriptional Regulator Of TetR Family Protein; Transcription Regulator TetR; TetR-Family Protein Transcriptional Regulator; Tetr Family Transcriptional Regulator; TetR/AcrR Family Transcriptional Regulator; TetR/AcrR-Family Trancriptional Regulatory Protein

Number of amino acids: Translated: 193; Mature: 192

Protein sequence:

>193_residues
MTPSPVSDKRQHVVETAYALFKRAGFHATGVDRIIAEADVAKMTMYRHFPSKDELIVAVLDYRARRFDDQLDKLAQKSIT
PEQKIAEIFDWHGRWFRSPDFHGCLFAHALAEFGDPGHPVFQAVARQKNGLRQRMRSILSEVMPRGRAENVAATLLMLIE
GATLMAQMGQADTALREARKTALDIIAASRRPQ

Sequences:

>Translated_193_residues
MTPSPVSDKRQHVVETAYALFKRAGFHATGVDRIIAEADVAKMTMYRHFPSKDELIVAVLDYRARRFDDQLDKLAQKSIT
PEQKIAEIFDWHGRWFRSPDFHGCLFAHALAEFGDPGHPVFQAVARQKNGLRQRMRSILSEVMPRGRAENVAATLLMLIE
GATLMAQMGQADTALREARKTALDIIAASRRPQ
>Mature_192_residues
TPSPVSDKRQHVVETAYALFKRAGFHATGVDRIIAEADVAKMTMYRHFPSKDELIVAVLDYRARRFDDQLDKLAQKSITP
EQKIAEIFDWHGRWFRSPDFHGCLFAHALAEFGDPGHPVFQAVARQKNGLRQRMRSILSEVMPRGRAENVAATLLMLIEG
ATLMAQMGQADTALREARKTALDIIAASRRPQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21772; Mature: 21641

Theoretical pI: Translated: 10.10; Mature: 10.10

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPSPVSDKRQHVVETAYALFKRAGFHATGVDRIIAEADVAKMTMYRHFPSKDELIVAVL
CCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
DYRARRFDDQLDKLAQKSITPEQKIAEIFDWHGRWFRSPDFHGCLFAHALAEFGDPGHPV
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCHH
FQAVARQKNGLRQRMRSILSEVMPRGRAENVAATLLMLIEGATLMAQMGQADTALREARK
HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
TALDIIAASRRPQ
HHHHHHHHCCCCC
>Mature Secondary Structure 
TPSPVSDKRQHVVETAYALFKRAGFHATGVDRIIAEADVAKMTMYRHFPSKDELIVAVL
CCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
DYRARRFDDQLDKLAQKSITPEQKIAEIFDWHGRWFRSPDFHGCLFAHALAEFGDPGHPV
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCHH
FQAVARQKNGLRQRMRSILSEVMPRGRAENVAATLLMLIEGATLMAQMGQADTALREARK
HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
TALDIIAASRRPQ
HHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA