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The map label for this gene is rpoE [H]

Identifier: 13476448

GI number: 13476448

Start: 6435717

End: 6436334

Strand: Direct

Name: rpoE [H]

Synonym: mlr7773

Alternate gene names: 13476448

Gene position: 6435717-6436334 (Clockwise)

Preceding gene: 13476447

Following gene: 13476449

Centisome position: 91.47

GC content: 65.53

Gene sequence:

>618_bases
GTGACCGGGGCGGCGGACCGCTTCGCGCTGGCCGCTTGCGCCGCGCCGGGAAGGCGCGTTGAATCGGGATCAACAAGGGC
GATTTCAGAACCAGCGGTCATGGACGAAAAGAAGGCAGCAATCCTTGGCGAAATACCGCGACTGCGCCGCTACGCACGCT
CGCTGTTGCGCGACCGGGATTCTGCCGACGACCTCGTCCAGGACTGCCTCGAGCGCGCACTCATGCGGCTCGACAACTGG
CAGACGGGAGAAAGCCCCAGGAGGTGGCTGTTTACGATCATGCATCATTTGTTCATCGACCAGATGCGTAAGGTGAACCG
TCGCGGCGAAGCGGCGATGCTGCCGCTGGAAGCAGGCGAGGCGGTTGCCCAGCCGGCCGAGCAGTTGGAGGGCATCGCCT
CGCGTGAGATCATCCACGCGCTGCAGGCGATCAGCCCCGATCGCCGCGCGGCCCTTGTCATGGTCGCCATCGAGGGCTTT
TCCTATGCCGAGGCCGCCAACATGCTGGGCGTTCCCGCCGGCACGCTGATGTCGCGCATCGCGCGCGGGCGTGAGGAACT
GCGCGGGTTGCTGGATGACACGGCGCGTCGCCGCGCGATAAGGATCGTCGAGAAATGA

Upstream 100 bases:

>100_bases
GCGCGGCGAAGGAGAAGATACCGGTCGTCGAACAATGACGGCAGGAATTCAATCAAGCCGGGAATAAACCGGCACCCGCC
AGCGTTATCTCATTGCTTGG

Downstream 100 bases:

>100_bases
TCCGCCGCGATTTTTCAGAACGTGACATCCATATGGCGCTCGACGGCGAACTGCCTGCCGACGAGCGCGCCGCCTATGAT
GCCTGGCTCGACGCCAATCC

Product: extracytoplasmic sigma factor EcfR

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 205; Mature: 204

Protein sequence:

>205_residues
MTGAADRFALAACAAPGRRVESGSTRAISEPAVMDEKKAAILGEIPRLRRYARSLLRDRDSADDLVQDCLERALMRLDNW
QTGESPRRWLFTIMHHLFIDQMRKVNRRGEAAMLPLEAGEAVAQPAEQLEGIASREIIHALQAISPDRRAALVMVAIEGF
SYAEAANMLGVPAGTLMSRIARGREELRGLLDDTARRRAIRIVEK

Sequences:

>Translated_205_residues
MTGAADRFALAACAAPGRRVESGSTRAISEPAVMDEKKAAILGEIPRLRRYARSLLRDRDSADDLVQDCLERALMRLDNW
QTGESPRRWLFTIMHHLFIDQMRKVNRRGEAAMLPLEAGEAVAQPAEQLEGIASREIIHALQAISPDRRAALVMVAIEGF
SYAEAANMLGVPAGTLMSRIARGREELRGLLDDTARRRAIRIVEK
>Mature_204_residues
TGAADRFALAACAAPGRRVESGSTRAISEPAVMDEKKAAILGEIPRLRRYARSLLRDRDSADDLVQDCLERALMRLDNWQ
TGESPRRWLFTIMHHLFIDQMRKVNRRGEAAMLPLEAGEAVAQPAEQLEGIASREIIHALQAISPDRRAALVMVAIEGFS
YAEAANMLGVPAGTLMSRIARGREELRGLLDDTARRRAIRIVEK

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014293
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 22759; Mature: 22627

Theoretical pI: Translated: 9.32; Mature: 9.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGAADRFALAACAAPGRRVESGSTRAISEPAVMDEKKAAILGEIPRLRRYARSLLRDRD
CCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCC
SADDLVQDCLERALMRLDNWQTGESPRRWLFTIMHHLFIDQMRKVNRRGEAAMLPLEAGE
CHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCHHCCH
AVAQPAEQLEGIASREIIHALQAISPDRRAALVMVAIEGFSYAEAANMLGVPAGTLMSRI
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHEEEEEEECCCCHHHHHHHCCCCHHHHHHHH
ARGREELRGLLDDTARRRAIRIVEK
HHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TGAADRFALAACAAPGRRVESGSTRAISEPAVMDEKKAAILGEIPRLRRYARSLLRDRD
CCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCC
SADDLVQDCLERALMRLDNWQTGESPRRWLFTIMHHLFIDQMRKVNRRGEAAMLPLEAGE
CHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCHHCCH
AVAQPAEQLEGIASREIIHALQAISPDRRAALVMVAIEGFSYAEAANMLGVPAGTLMSRI
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHEEEEEEECCCCHHHHHHHCCCCHHHHHHHH
ARGREELRGLLDDTARRRAIRIVEK
HHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]